# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 4.91e-25 2b3jA 159 8.10e-25 c.97.1.2 127787 1z3aA 168 1.73e-24 c.97.1.2 124396 1wwrA 171 2.84e-23 c.97.1.2 121366 2g84A 197 3.86e-23 c.97.1.2 134766 1wkqA 164 7.79e-23 c.97.1.2 109393 2a8nA 144 6.24e-22 c.97.1.2 126408 1p6oA 161 2.19e-20 c.97.1.2 94185 2b3zA 373 5.20e-20 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 5.57e-20 c.97.1.2 114004 2hxvA 360 1.49e-19 c.71.1.2,c.97.1.2 136859,136860 2hvwA 184 8.15e-19 1ctt 294 8.70e-13 1cttA 294 1.18e-12 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 1.01e-09 2fr5A 146 3.89e-08 c.97.1.1 133965 1r5tA 142 1.33e-07 c.97.1.1 104812 1uwzA 136 1.57e-07 c.97.1.1 108081 2z3hA 130 6.16e-07 1wn5A 130 1.18e-06 c.97.1.1 121082 2nytA 190 0.01118 1zkjA 359 1.853 2ffyA 358 3.464 e.3.1.1 133394 2qjoA 341 3.472 1rgzA 363 3.804 e.3.1.1 97457 1rgyA 360 3.834 e.3.1.1 97456 2ehgA 149 4.346 1vhuA 211 5.662 c.50.1.2 100703 1ci9A 392 5.991 e.3.1.1 64767 2dvtA 327 6.119 c.1.9.15 131793 3ciwA 348 6.439 1iirA 415 7.712 c.87.1.5 62453 1spvA 184 8.080 c.50.1.2 98957 1jl1A 155 9.504 c.55.3.1 66821 1a8sA 273 9.542 c.69.1.12 34710 2fb1A 226 11.14 a.4.5.68,d.113.1.6 133225,133226 2a6tA 271 11.55 a.242.1.1,d.113.1.7 126309,126310 2eo5A 419 13.77 1jflA 228 14.13 c.78.2.1,c.78.2.1 71656,71657 2hb5A 164 15.48 2oqrA 230 15.57 2i8tA 167 15.67 2i7vA 459 15.88 1jl2A 156 15.98 c.55.3.1 66822 2ivnA 330 17.35 2c2nA 339 17.60 1wyuB 474 17.64 c.67.1.7 121453 2b06A 155 18.21 d.113.1.1 127624 1vflA 356 18.33 c.1.9.1 120041 2uwxA 494 19.02 e.3.1.1 140002 2dx6A 159 19.54 1lk9A 448 19.86 c.67.1.1 78057 2o0aA 298 20.58 1yqsA 349 21.49 e.3.1.1 123899 1ryaA 160 22.15 d.113.1.5 105122 1dcfA 136 22.71 c.23.1.2 31124 2qjtA 352 22.85 1zy7A 403 23.69 1n3yA 198 23.88 c.62.1.1 79976 1mqeA 207 27.75 d.113.1.1 91394 2fb2A 340 28.31 1fobA 334 29.88 c.1.8.3 83255 2ch5A 347 30.45 c.55.1.5,c.55.1.5 130453,130454 2z07A 420 30.72 2o5fA 171 30.82 2h5uA 499 31.50 1shuX 182 32.49 c.62.1.1 98882 2b0vA 153 32.53 d.113.1.1 127650 2vdjA 301 34.08 3cngA 189 34.40 2pqvA 154 35.02 3cg4A 142 35.30 2qzjA 136 35.88 2p0iA 456 36.72 2qkiC 343 36.80 1zbfA 142 36.98 c.55.3.1 124850 3c97A 140 38.40 3cnbA 143 38.75 1p4kA 295 38.78 d.153.1.5 87772 2qyvA 487 39.04 1t3qA 168 40.97 a.56.1.1,d.15.4.2 106367,106368 2vlbA 251 41.14 2gkgA 127 41.71 2icsA 379 43.50 b.92.1.8,c.1.9.14 137241,137242 2ffiA 288 44.03 c.1.9.15 133385 2rjnA 154 45.76 2d0oA 610 46.40 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 1xhfA 123 46.88 c.23.1.1 122003 2drwA 363 47.55 e.3.1.1 131674 1yd9A 193 49.07 c.50.1.2 122976 2cjgA 449 49.16 1zh2A 121 49.31 c.23.1.1 125069 1zgzA 122 50.54 c.23.1.1 125065 1in4A 334 51.33 a.4.5.11,c.37.1.20 62597,62598 2eabA 899 51.75 2ew2A 316 51.93 1cc1S 283 51.98 e.19.1.1 43313 3c3mA 138 53.80 1gycA 499 54.21 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1qkkA 155 54.71 c.23.1.1 31104 1auoA 218 54.72 c.69.1.14 34716 2nn6B 249 54.86 2dkoA 146 55.51 1sjyA 159 56.87 d.113.1.1 98900 2bg1A 494 58.19 e.3.1.1 128457 1lopA 164 59.63 b.62.1.1 27510 3d0rA 398 62.22 2oq2A 261 63.28 2p6pA 384 63.35 2r14A 377 65.57 2fp7B 172 65.72 b.47.1.3 133899 2fmlA 273 68.03 a.4.5.68,d.113.1.6 133778,133779 1kwgA 645 71.30 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 2uubE 162 73.15 d.14.1.1,d.50.1.2 139936,139937 1v8yA 170 73.28 d.113.1.1 113581 1g0sA 209 74.08 d.113.1.1 60187 2pw9A 268 75.80 1ituA 369 76.07 c.1.9.7 71423 2a9oA 120 77.44 c.23.1.1 126444 2qr3A 140 77.67 2p02A 396 78.25 2yvpA 182 78.83 1srrA 124 79.20 c.23.1.1 31110 1q77A 138 79.74 c.26.2.4 96023 2v2fF 390 80.78 1to3A 304 81.08 c.1.10.1 107161 3cs3A 277 81.12 2jbaA 127 82.08 1rm6C 161 84.87 a.56.1.1,d.15.4.2 111876,111877 3cgvA 397 85.07 1tkeA 224 88.81 d.15.10.1,d.67.1.1 112470,112471 1k2eA 156 89.00 d.113.1.1 72010