# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 2.81e-10 2b3jA 159 3.12e-10 c.97.1.2 127787 1z3aA 168 2.80e-09 c.97.1.2 124396 1wwrA 171 1.27e-08 c.97.1.2 121366 2a8nA 144 5.45e-08 c.97.1.2 126408 2hxvA 360 9.43e-08 c.71.1.2,c.97.1.2 136859,136860 2g84A 197 2.44e-07 c.97.1.2 134766 1p6oA 161 2.52e-07 c.97.1.2 94185 1vq2A 193 3.48e-07 c.97.1.2 114004 2b3zA 373 5.13e-07 c.71.1.2,c.97.1.2 127807,127808 1wkqA 164 1.48e-06 c.97.1.2 109393 2hvwA 184 2.66e-06 2fr5A 146 0.06160 c.97.1.1 133965 1uwzA 136 0.06365 c.97.1.1 108081 1r5tA 142 0.09383 c.97.1.1 104812 1ctt 294 0.3985 1cttA 294 0.5485 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 0.6445 2z3hA 130 0.7659 1wn5A 130 1.147 c.97.1.1 121082 2pw9A 268 2.939 2o2xA 218 5.529 1vk9A 151 5.707 c.97.1.3 108640 1vi2A 300 6.910 c.2.1.7,c.58.1.5 100726,100727 1rvkA 382 10.40 c.1.11.2,d.54.1.1 97928,97929 1n3yA 198 10.88 c.62.1.1 79976 1zkpA 268 11.37 d.157.1.9 125205 2r14A 377 11.59 2gouA 365 15.25 2z5lA 511 15.93 1vyrA 364 17.75 c.1.4.1 108906 3dahA 319 20.95 2pceA 386 20.97 1oheA 348 24.99 c.45.1.1,c.45.1.1 87013,87014 1o08A 221 25.84 c.108.1.6 86525 2z08A 137 25.89 2a5hA 416 26.06 1gnlA 544 26.84 e.26.1.1 70287 1ub3A 220 31.26 c.1.10.1 88395 1puiA 210 34.89 c.37.1.8 88292 1q3qA 548 36.08 a.129.1.2,c.8.5.2,d.56.1.2 95704,95705,95706 1a6dB 543 36.24 a.129.1.2,c.8.5.2,d.56.1.2 19489,30820,38937 1mf7A 194 38.38 c.62.1.1 84937 2pmqA 377 38.44 1shuX 182 38.83 c.62.1.1 98882 1qq9A 284 39.13 c.56.5.4 33841 1uf5A 303 39.47 d.160.1.2 107808 3cyjA 372 40.39 1t3yA 141 40.73 d.109.1.2 119141 1j31A 262 42.76 d.160.1.2 90808 1iz0A 302 42.80 b.35.1.2,c.2.1.1 83821,83822 1mdlA 359 44.53 c.1.11.2,d.54.1.1 29247,38891 1mdl 359 45.07 2brxA 244 45.18 c.73.1.3 129028 1c1dA 355 45.73 c.2.1.7,c.58.1.1 30270,33918 1dekA 241 46.03 c.37.1.1 31842 2oz8A 389 47.41 2pibA 216 47.61 2r11A 306 48.41 2vlbA 251 49.03 1a8sA 273 49.60 c.69.1.12 34710 1fjgK 129 49.77 c.55.4.1 33733 2rdxA 379 49.89 1gntA 553 51.46 e.26.1.1 70290 1tkjA 284 57.66 c.56.5.4 119296 2qmlA 198 60.17 1pl8A 356 64.88 b.35.1.2,c.2.1.1 94878,94879 2uubK 129 65.05 c.55.4.1 139942 2o95A 187 65.50 2r6oA 294 65.80 2dgdA 223 65.88 2ps2A 371 65.96 1ijbA 202 66.50 c.62.1.1 71229 1tkkA 366 67.93 c.1.11.2,d.54.1.1 107089,107090 1oltA 457 68.03 c.1.28.2 93334 1xcbA 211 69.86 a.4.5.38,c.2.1.12 109552,109553 1z0wA 207 71.23 1zs9A 261 71.64 c.108.1.22 125600 2dy0A 190 72.70 2fi9A 128 73.09 c.103.1.1 133513 2om6A 235 74.47 2i2xB 258 74.52 1a53 247 75.48 1vkkA 154 77.54 d.109.1.2 108669 2i2wA 212 77.73 2d5lA 706 78.19 1q0pA 223 78.55 c.62.1.1 95507 2nu8B 388 79.62 1e19A 314 79.69 c.73.1.1 34967 1lt8A 406 80.97 c.1.26.1 78186 2f4dA 184 81.42 2z3zA 706 81.48 1zq6A 359 82.53 1hrhA 136 82.77 c.55.3.1 33577 1wd5A 208 82.91 c.61.1.1 114524 1rtqA 299 85.53 c.56.5.4 97819 1n7kA 234 85.62 c.1.10.1 85374 1o0yA 260 86.14 c.1.10.1 80756 2dt5A 211 86.69 a.4.5.38,c.2.1.12 131708,131709 1hlgA 371 87.02 c.69.1.6 34656 2qddA 378 87.13 1lehA 364 88.64 c.2.1.7,c.58.1.1 30268,33916 1pt6A 213 88.84 c.62.1.1 95091