Best Alignments for TR461

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2nx8A	1.5639e-24	2nx8A/TR461-2nx8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2b3jA	2.3644e-23	2b3jA/TR461-2b3jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
1z3aA	5.7849e-23	1z3aA/TR461-1z3aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
1wwrA	1.9441e-22	1wwrA/TR461-1wwrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
1wkqA	3.8776e-22	1wkqA/TR461-1wkqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
2g84A	7.3544e-22	2g84A/TR461-2g84A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
1tiyA	1.5348e-21	1tiyA/TR461-1tiyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
1p6oA	1.9918e-21	1p6oA/TR461-1p6oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
2hxvA	4.7634e-21	2hxvA/TR461-2hxvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.71.1.2 c.97.1.2
2b3zA	5.0143e-21	2b3zA/TR461-2b3zA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.71.1.2 c.97.1.2
2a8nA	8.6073e-21	2a8nA/TR461-2a8nA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
2hvwA	1.7285e-19	2hvwA/TR461-2hvwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vq2A	1.8068e-19	1vq2A/TR461-1vq2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
1ctt	1.4908e-12	1ctt/TR461-1ctt-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1cttA	2.5204e-12	1cttA/TR461-1cttA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1 c.97.1.1
3b8fA	7.1589e-04	3b8fA/TR461-3b8fA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fr5A	2.4483e-03	2fr5A/TR461-2fr5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1
1jtkA	2.7022e-03	1jtkA/TR461-1jtkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1
1uwzA	8.4737e-03	1uwzA/TR461-1uwzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1
2nytA	1.5438e-02	2nytA/TR461-2nytA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001