# List of top-scoring protein chains for TR461.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1z3aA 168 9.98e-21 c.97.1.2 124396 2b3jA 159 2.57e-20 c.97.1.2 127787 2nx8A 179 9.12e-19 1wwrA 171 1.65e-18 c.97.1.2 121366 2a8nA 144 9.70e-18 c.97.1.2 126408 1wkqA 164 3.64e-16 c.97.1.2 109393 1tiyA 164 3.87e-16 c.97.1.2 107012 2o7pA 380 4.14e-16 2g6vA 402 4.26e-16 2b3zA 373 7.12e-16 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 1.71e-15 c.71.1.2,c.97.1.2 136859,136860 1ysbA 161 2.10e-14 c.97.1.2 123966 2o3kA 161 2.17e-14 1ysdA 161 2.22e-14 c.97.1.2 123968 1uaqA 158 2.79e-14 c.97.1.2 88386 1p6oA 161 2.87e-14 c.97.1.2 94185 2hvwA 184 5.74e-13 1vq2A 193 5.98e-13 c.97.1.2 114004 2g84A 197 8.95e-11 c.97.1.2 134766 1ux1A 136 0.007927 c.97.1.1 108085 2nytA 190 0.07423 2fr5A 146 0.2161 c.97.1.1 133965 1mq0A 140 0.4061 c.97.1.1 91389 1cttA 294 0.5132 c.97.1.1,c.97.1.1 36022,36023 1r5tA 142 0.7123 c.97.1.1 104812 1ux0A 136 0.9051 c.97.1.1 108083 1jtkA 136 1.256 c.97.1.1 71862 1uwzA 136 1.389 c.97.1.1 108081 1vdnA 162 1.983 b.62.1.1 120006 1qoiA 177 2.348 b.62.1.1 27490 2d30A 141 2.382 c.97.1.1 131190 2jywA 195 4.324 2rkxA 255 6.694 2poyA 186 9.583 2oqbA 117 14.97 2fu0A 160 16.50 b.62.1.1 134095 2e54A 385 20.14 1qngA 170 20.95 b.62.1.1 27507 2ordA 397 21.04 2o3tA 262 22.65 1wy7A 207 23.00 c.66.1.32 121433 1yh3A 256 23.77 1zvmA 256 23.84 2i66A 262 24.54 2ef1A 256 25.12 2o3rA 262 25.89 2hctA 262 27.59 2o3sA 262 27.86 1jfuA 186 28.95 c.47.1.10 62940 1ad5A 438 32.41 b.34.2.1,d.93.1.1,d.144.1.7 24505,40491,41681 1qcfA 454 33.47 b.34.2.1,d.93.1.1,d.144.1.7 24498,40490,41680 1gkrA 458 34.99 b.92.1.3,c.1.9.6 70251,70252 2rgjA 402 38.10 3c96A 410 38.11 2aq5A 402 41.97 1xd8A 289 44.26 2z3hA 130 47.90 2dfhA 221 48.89 c.55.3.1 131472 2dfeA 209 49.11 2dffA 213 49.20 3b3jA 480 49.30 1ljuA 131 50.17 c.44.1.1 73944 1jf8A 131 50.19 c.44.1.1 66621 2z3jA 130 50.96 1h0zA 68 51.21 g.68.1.2 83445 1gsaA 316 51.36 c.30.1.3,d.142.1.1 31718,41477 2ct2A 88 51.89 1io2A 213 53.24 c.55.3.1 62612 1xhsA 121 54.16 d.269.1.1 115304 2cd7A 131 54.81 2c6xA 363 54.97 1z81A 229 55.19 b.62.1.1 124685 1qnhA 170 55.95 b.62.1.1 27508 1un3A 123 57.75 d.5.1.1 99646 1aozA 552 59.20 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 1x1pA 212 60.94 c.55.3.1 121594 1vbkA 307 62.98 c.26.2.6,d.308.1.1 119957,119958 2jqvA 165 63.15 1ljlA 131 63.53 c.44.1.1 73939 2g1lA 104 64.38 b.26.1.2 134520 2btvC 349 69.07 a.115.1.1,b.19.1.1 19086,23782 2b5vA 357 69.86 1gpwA 253 70.31 c.1.2.1 65460 1bvp1 349 71.92 2b25A 336 72.01 c.66.1.13 127699 1rxiA 131 75.00 c.44.1.1 105116 1lk0A 131 75.55 c.44.1.1 73948 2vr2A 541 75.82 1i2kA 269 78.12 e.17.1.1 90661 2bhwA 232 78.25 1vh7A 265 78.74 c.1.2.1 100646 2dq0A 455 80.03 1ka1A 357 81.45 e.7.1.1 68369 2vqeE 162 82.62 1so3A 216 82.63 c.1.2.3 105834 2jgtA 422 86.05 2ouwA 138 86.13 1mzuA 129 88.46 d.110.3.1 79714 1vcrA 232 89.45 i.5.1.1 100560