# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2b3jA 159 1.52e-23 c.97.1.2 127787 2nx8A 179 2.08e-23 1z3aA 168 6.97e-23 c.97.1.2 124396 1wwrA 171 1.50e-22 c.97.1.2 121366 1wkqA 164 4.59e-22 c.97.1.2 109393 2g84A 197 7.98e-22 c.97.1.2 134766 1tiyA 164 3.91e-21 c.97.1.2 107012 2a8nA 144 5.46e-21 c.97.1.2 126408 1p6oA 161 4.22e-20 c.97.1.2 94185 2b3zA 373 5.96e-19 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 1.18e-18 c.97.1.2 114004 2hvwA 184 2.69e-18 2hxvA 360 1.04e-17 c.71.1.2,c.97.1.2 136859,136860 1ctt 294 2.15e-11 1cttA 294 2.89e-11 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 0.001614 2fr5A 146 0.002274 c.97.1.1 133965 1uwzA 136 0.01026 c.97.1.1 108081 1jtkA 136 0.01563 c.97.1.1 71862 1r5tA 142 0.02387 c.97.1.1 104812 2nytA 190 0.05211 1wn5A 130 0.7179 c.97.1.1 121082 1zy7A 403 1.252 2bl9A 238 1.266 2z3hA 130 1.331 1sdeA 347 5.801 e.3.1.1 112073 2qxfA 482 6.438 3cngA 189 7.998 1thfD 253 8.919 c.1.2.1 28535 1vh7A 265 9.187 c.1.2.1 100646 1mzuA 129 9.530 d.110.3.1 79714 2id0A 644 12.41 2r14A 377 13.26 2z00A 426 15.24 3pte 349 16.36 2pbtA 134 17.46 2o1cA 150 17.75 2ffyA 358 18.41 e.3.1.1 133394 1mp4A 292 18.64 c.68.1.6 79376 1ci9A 392 18.93 e.3.1.1 64767 1ido 192 21.54 2pw9A 268 21.79 1bueA 265 22.49 e.3.1.1 42727 1zkjA 359 22.88 1yqsA 349 23.81 e.3.1.1 123899 1uuqA 440 24.92 c.1.8.3 100015 2qjtA 352 25.44 2fb1A 226 25.79 a.4.5.68,d.113.1.6 133225,133226 2a0nA 265 26.00 c.1.2.1 125961 2i8tA 167 26.79 2pqvA 154 26.92 2drwA 363 27.71 e.3.1.1 131674 3ciwA 348 27.79 1ox6A 555 29.34 c.1.2.1,c.23.16.1 87505,87506 1rgzA 363 29.45 e.3.1.1 97457 1pwgA 349 29.86 e.3.1.1 104340 1h5yA 253 31.29 c.1.2.1 65638 1lvwA 295 31.53 c.68.1.6 84723 2i5eA 211 32.17 1jykA 254 32.33 c.68.1.13 67458 1k20A 310 33.11 c.107.1.1 68027 1l0gA 358 33.85 e.3.1.1 73400 1i0lA 221 34.23 c.61.1.1 71096 2ef7A 133 35.58 1sc3A 178 35.76 c.17.1.1 105416 1wyzA 242 36.99 c.90.1.1 121471 1jflA 228 37.04 c.78.2.1,c.78.2.1 71656,71657 1fsyA 358 37.24 e.3.1.1 60016 1eu1A 780 41.08 b.52.2.2,c.81.1.1 26903,35311 2dkoA 146 41.69 1rgyA 360 42.80 e.3.1.1 97456 2ch5A 347 43.08 c.55.1.5,c.55.1.5 130453,130454 1jl2A 156 44.21 c.55.3.1 66822 2hb5A 164 46.75 1ghsA 306 46.81 c.1.8.3 28840 2fmlA 273 50.16 a.4.5.68,d.113.1.6 133778,133779 1v7zA 260 50.69 c.125.1.1 100488 2ivnA 330 51.02 1qo2A 241 52.36 c.1.2.1 28533 2j7vA 298 53.40 2igiA 180 53.45 1v8yA 170 54.11 d.113.1.1 113581 1zczA 464 54.75 c.24.1.3,c.97.1.4 124923,124924 1i2sA 282 58.71 e.3.1.1 71104 3c3mA 138 59.59 2ix0A 663 59.68 2dkfA 431 59.84 1xbyA 216 60.01 c.1.2.3 121846 2a6tA 271 60.08 a.242.1.1,d.113.1.7 126309,126310 2cygA 312 60.66 c.1.8.3 131025 1v82A 253 63.65 c.68.1.7 108415 1glcG 501 64.84 c.55.1.4,c.55.1.4 33519,33520 1ecfA 504 65.53 c.61.1.1,d.153.1.1 34053,41820 2b06A 155 67.15 d.113.1.1 127624 2fkbA 180 67.99 d.113.1.2 133650 1vk9A 151 68.04 c.97.1.3 108640 2ehgA 149 68.45 2iw0A 254 68.50 c.6.2.3 137737 1puiA 210 68.65 c.37.1.8 88292 1t0aA 159 68.68 d.79.5.1 112192 2ov5A 261 70.06 1vzwA 244 70.18 c.1.2.1 120553 2guiA 194 71.40 c.55.3.5 135737 1ttzA 87 71.73 c.47.1.1 107309 1gx1A 160 72.14 d.79.5.1 70675 1potA 325 72.66 c.94.1.1 35807 2hjhA 354 73.95 1icpA 376 74.11 c.1.4.1 62270 2o9cA 342 75.81 1b2pA 119 77.40 b.78.1.1 27998 1q77A 138 78.04 c.26.2.4 96023 1rrmA 386 78.52 e.22.1.2 105081 2ar9A 278 78.98 1vhzA 198 79.43 d.113.1.1 100718 1jvnA 555 80.36 c.1.2.1,c.23.16.1 67355,67356 1ej1A 190 81.28 d.86.1.1 40144 2yvdA 431 81.34 1shuX 182 81.58 c.62.1.1 98882 1mldA 314 84.88 c.2.1.5,d.162.1.1 30122,42089 1vyrA 364 84.91 c.1.4.1 108906 2rihA 141 85.72 1n62A 166 86.36 a.56.1.1,d.15.4.2 80090,80091 3czqA 304 87.45 1g0cA 364 89.22 c.1.8.3 60165 1tzyD 103 89.49 a.22.1.1 107533