# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2b3jA 159 1.78e-23 c.97.1.2 127787 2nx8A 179 2.23e-23 1z3aA 168 6.31e-23 c.97.1.2 124396 1wwrA 171 1.04e-22 c.97.1.2 121366 1wkqA 164 3.12e-22 c.97.1.2 109393 2g84A 197 6.67e-22 c.97.1.2 134766 1tiyA 164 2.41e-21 c.97.1.2 107012 2a8nA 144 4.86e-21 c.97.1.2 126408 1p6oA 161 4.46e-20 c.97.1.2 94185 2b3zA 373 2.64e-19 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 1.08e-18 c.97.1.2 114004 2hxvA 360 3.27e-18 c.71.1.2,c.97.1.2 136859,136860 2hvwA 184 4.18e-18 1ctt 294 1.00e-11 1cttA 294 1.50e-11 c.97.1.1,c.97.1.1 36022,36023 2fr5A 146 0.001301 c.97.1.1 133965 3b8fA 142 0.001618 1uwzA 136 0.005306 c.97.1.1 108081 1jtkA 136 0.008875 c.97.1.1 71862 2nytA 190 0.02554 1r5tA 142 0.02565 c.97.1.1 104812 1zy7A 403 1.111 1wn5A 130 1.694 c.97.1.1 121082 2z3hA 130 2.102 2bl9A 238 2.604 3cngA 189 5.466 1sdeA 347 6.268 e.3.1.1 112073 1zkjA 359 7.122 1thfD 253 7.254 c.1.2.1 28535 1vh7A 265 8.005 c.1.2.1 100646 2ffyA 358 9.001 e.3.1.1 133394 2z00A 426 9.782 2qxfA 482 12.92 2pw9A 268 14.00 1ci9A 392 14.73 e.3.1.1 64767 2r14A 377 16.16 2drwA 363 16.64 e.3.1.1 131674 2pbtA 134 16.64 1rgzA 363 17.14 e.3.1.1 97457 1mzuA 129 17.89 d.110.3.1 79714 1l0gA 358 18.01 e.3.1.1 73400 1eu1A 780 21.69 b.52.2.2,c.81.1.1 26903,35311 1rgyA 360 22.29 e.3.1.1 97456 3pte 349 22.65 1yqsA 349 24.07 e.3.1.1 123899 1bueA 265 25.35 e.3.1.1 42727 1ox6A 555 26.07 c.1.2.1,c.23.16.1 87505,87506 1fsyA 358 26.36 e.3.1.1 60016 2a0nA 265 27.40 c.1.2.1 125961 1mp4A 292 27.77 c.68.1.6 79376 2i8tA 167 28.32 2o1cA 150 28.61 1h5yA 253 29.14 c.1.2.1 65638 1pwgA 349 29.76 e.3.1.1 104340 2igiA 180 29.80 2qjtA 352 30.19 1v7zA 260 30.95 c.125.1.1 100488 1i2sA 282 31.52 e.3.1.1 71104 2fb1A 226 31.80 a.4.5.68,d.113.1.6 133225,133226 1ido 192 32.55 2i5eA 211 37.86 3ciwA 348 40.04 1zczA 464 41.19 c.24.1.3,c.97.1.4 124923,124924 2ix0A 663 41.99 2ch5A 347 42.04 c.55.1.5,c.55.1.5 130453,130454 1uuqA 440 42.95 c.1.8.3 100015 1jykA 254 44.03 c.68.1.13 67458 2pqvA 154 44.90 1vk9A 151 46.43 c.97.1.3 108640 1v8yA 170 46.52 d.113.1.1 113581 1k20A 310 47.14 c.107.1.1 68027 2dkoA 146 48.57 2id0A 644 50.94 1jl2A 156 53.05 c.55.3.1 66822 2j7vA 298 53.30 1i0lA 221 54.07 c.61.1.1 71096 1vzwA 244 54.14 c.1.2.1 120553 2dcfA 392 54.23 1glcG 501 54.60 c.55.1.4,c.55.1.4 33519,33520 1ghsA 306 57.10 c.1.8.3 28840 1jvnA 555 57.17 c.1.2.1,c.23.16.1 67355,67356 3czqA 304 58.14 1v7rA 186 59.28 c.51.4.1 100482 2guiA 194 59.51 c.55.3.5 135737 1t0aA 159 59.53 d.79.5.1 112192 1iv3A 152 61.56 d.79.5.1 76828 1j53A 186 62.14 c.55.3.5 77076 1tzyD 103 63.62 a.22.1.1 107533 2fliA 220 65.98 c.1.2.2 133714 1t3vA 124 66.39 c.55.5.1 112232 1wyzA 242 66.68 c.90.1.1 121471 2ef7A 133 66.78 2hb5A 164 68.09 2cy2A 174 68.29 d.108.1.1 131016 2ov5A 261 68.62 1gx1A 160 70.09 d.79.5.1 70675 1sc3A 178 70.19 c.17.1.1 105416 1mmsA 140 71.98 a.4.7.1,d.47.1.1 16247,38766 2a6tA 271 72.38 a.242.1.1,d.113.1.7 126309,126310 1jflA 228 72.47 c.78.2.1,c.78.2.1 71656,71657 2cygA 312 73.04 c.1.8.3 131025 2ivnA 330 73.25 1q77A 138 74.64 c.26.2.4 96023 1ecfA 504 75.73 c.61.1.1,d.153.1.1 34053,41820 1hzoA 271 78.94 e.3.1.1 71092 1ttzA 87 79.74 c.47.1.1 107309 2fkbA 180 79.80 d.113.1.2 133650 2gwnA 452 80.47 2odsA 265 80.76 1n9bA 265 81.32 e.3.1.1 85463 1nksA 194 82.75 c.37.1.1 31886 1qo2A 241 84.02 c.1.2.1 28533 2b06A 155 85.41 d.113.1.1 127624 1vyrA 364 86.18 c.1.4.1 108906 2ar9A 278 86.92 2dkfA 431 87.32 2pbeA 294 88.09 1nwzA 125 89.92 d.110.3.1 86370 3pyp 125 89.92