# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 1.25e-22 2b3jA 159 1.40e-22 c.97.1.2 127787 1z3aA 168 3.26e-22 c.97.1.2 124396 1wwrA 171 8.11e-22 c.97.1.2 121366 1wkqA 164 2.83e-21 c.97.1.2 109393 2g84A 197 3.58e-21 c.97.1.2 134766 1tiyA 164 1.61e-20 c.97.1.2 107012 2a8nA 144 2.28e-20 c.97.1.2 126408 1p6oA 161 6.36e-19 c.97.1.2 94185 2b3zA 373 2.41e-18 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 1.04e-17 c.97.1.2 114004 2hxvA 360 2.21e-17 c.71.1.2,c.97.1.2 136859,136860 2hvwA 184 2.50e-17 1cttA 294 7.24e-11 c.97.1.1,c.97.1.1 36022,36023 1ctt 294 8.56e-11 3b8fA 142 0.000741 2fr5A 146 0.002540 c.97.1.1 133965 1uwzA 136 0.009257 c.97.1.1 108081 1jtkA 136 0.01986 c.97.1.1 71862 1r5tA 142 0.02992 c.97.1.1 104812 2nytA 190 0.05681 1wn5A 130 1.542 c.97.1.1 121082 1zy7A 403 2.324 2z3hA 130 2.997 3cngA 189 3.312 1xbyA 216 3.813 c.1.2.3 121846 2pqvA 154 4.149 1sdeA 347 4.326 e.3.1.1 112073 2pbtA 134 4.627 1bmqA 167 5.817 c.17.1.1 30998 2pw9A 268 5.907 2bl9A 238 6.056 1thfD 253 6.193 c.1.2.1 28535 2qjtA 352 6.495 1zkjA 359 6.505 2dkoA 146 6.712 2qxfA 482 6.903 1l0gA 358 7.678 e.3.1.1 73400 1vh7A 265 7.729 c.1.2.1 100646 1sc3A 178 8.056 c.17.1.1 105416 2z00A 426 8.602 2r14A 377 9.441 2ffyA 358 9.923 e.3.1.1 133394 2ef7A 133 10.07 1qtnA 164 10.26 c.17.1.1 30999 3pte 349 10.53 1rgzA 363 11.08 e.3.1.1 97457 1eu1A 780 11.10 b.52.2.2,c.81.1.1 26903,35311 2ar9A 278 12.29 1ci9A 392 12.45 e.3.1.1 64767 2o1cA 150 13.83 1qo2A 241 14.07 c.1.2.1 28533 1rgyA 360 14.28 e.3.1.1 97456 1fsyA 358 14.72 e.3.1.1 60016 1zczA 464 14.91 c.24.1.3,c.97.1.4 124923,124924 2zogA 479 15.16 1xrtA 467 17.02 b.92.1.3,c.1.9.6 122258,122259 1h5yA 253 17.62 c.1.2.1 65638 1pwgA 349 17.75 e.3.1.1 104340 1yqsA 349 17.93 e.3.1.1 123899 2i8tA 167 18.61 2fliA 220 19.07 c.1.2.2 133714 1ex2A 189 19.18 c.51.4.2 33225 1nmsA 249 20.43 c.17.1.1 85879 1mp4A 292 20.53 c.68.1.6 79376 1q6oA 216 22.04 c.1.2.3 95986 1vzwA 244 22.47 c.1.2.1 120553 2fb5A 205 22.61 d.320.1.1 133235 2drwA 363 23.39 e.3.1.1 131674 1jflA 228 23.81 c.78.2.1,c.78.2.1 71656,71657 1twdA 256 24.42 c.1.30.1 107397 2i5eA 211 24.61 2fb1A 226 24.70 a.4.5.68,d.113.1.6 133225,133226 1gkrA 458 25.10 b.92.1.3,c.1.9.6 70251,70252 1bueA 265 25.41 e.3.1.1 42727 2b0vA 153 26.30 d.113.1.1 127650 2a0nA 265 26.39 c.1.2.1 125961 1mzuA 129 27.25 d.110.3.1 79714 1pyoA 167 27.56 c.17.1.1 95370 1g5cA 170 27.90 c.53.2.1 60264 1k20A 310 28.82 c.107.1.1 68027 1ox6A 555 28.97 c.1.2.1,c.23.16.1 87505,87506 1ei5A 520 29.04 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1vhzA 198 29.23 d.113.1.1 100718 1v8yA 170 29.79 d.113.1.1 113581 3ciwA 348 31.41 2hb5A 164 31.43 1v7zA 260 32.02 c.125.1.1 100488 1uuqA 440 32.04 c.1.8.3 100015 1icpA 376 33.86 c.1.4.1 62270 2a6tA 271 35.16 a.242.1.1,d.113.1.7 126309,126310 2gwnA 452 37.40 2g76A 335 39.04 1jykA 254 39.94 c.68.1.13 67458 1ttzA 87 41.86 c.47.1.1 107309 2dcfA 392 41.89 2b06A 155 42.84 d.113.1.1 127624 1ybqB 390 43.38 2fkbA 180 43.43 d.113.1.2 133650 1k2eA 156 46.14 d.113.1.1 72010 2guiA 194 47.32 c.55.3.5 135737 2igiA 180 47.62 2o9cA 342 48.54 1vk9A 151 50.55 c.97.1.3 108640 2qjoA 341 51.00 2j7vA 298 52.01 1zc6A 305 52.70 c.55.1.5,c.55.1.5 124888,124889 2ov5A 261 54.80 1vljA 407 57.04 e.22.1.2 108832 1onxA 390 57.33 b.92.1.7,c.1.9.13 87176,87177 2a9fA 398 58.70 2fb2A 340 59.54 2rihA 141 61.38 1j53A 186 62.17 c.55.3.5 77076 2dgkA 452 63.85 1t0aA 159 66.36 d.79.5.1 112192 1iv3A 152 66.61 d.79.5.1 76828 1ghsA 306 67.72 c.1.8.3 28840 2gagA 965 68.75 1vyrA 364 68.81 c.1.4.1 108906 1xi3A 215 69.90 c.1.3.1 109601 1wyzA 242 71.10 c.90.1.1 121471 1fxoA 293 71.33 c.68.1.6 34524 2gouA 365 71.58 1fsuA 492 74.28 c.76.1.2 35032 1onwA 390 74.79 b.92.1.7,c.1.9.13 87172,87173 2nycA 144 75.80 d.37.1.1 138812 1h5rA 293 76.30 c.68.1.6 65623 2bdqA 224 76.92 1tvfA 369 77.15 b.105.1.2,e.3.1.1 107358,107359 2cygA 312 77.28 c.1.8.3 131025 4blmA 265 78.54 e.3.1.1 42721 2ac4A 309 78.70 2ivnA 330 79.16 1j6pA 418 79.17 b.92.1.4,c.1.9.9 77089,77090 2hcrA 326 79.86 1t5iA 172 81.24 c.37.1.19 106450 1gx1A 160 81.32 d.79.5.1 70675 1p1mA 406 81.32 b.92.1.4,c.1.9.9 87696,87697 1fmtA 314 81.60 b.46.1.1,c.65.1.1 25758,34174 1j54A 186 81.73 c.55.3.5 77077 2rc3A 135 83.54 2o8jA 281 84.00 1xkfA 133 85.12 d.37.1.1,d.37.1.1 122077,122078 2ehgA 149 85.52 2dhoA 235 86.15 1rrmA 386 86.37 e.22.1.2 105081 1kjqA 391 86.93 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1v82A 253 88.73 c.68.1.7 108415 2h1vA 310 89.10