# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 8.58e-27 2b3jA 159 9.89e-27 c.97.1.2 127787 1z3aA 168 2.54e-26 c.97.1.2 124396 1wwrA 171 6.48e-26 c.97.1.2 121366 1wkqA 164 8.18e-26 c.97.1.2 109393 2g84A 197 4.14e-25 c.97.1.2 134766 1tiyA 164 9.76e-25 c.97.1.2 107012 2a8nA 144 4.56e-24 c.97.1.2 126408 1p6oA 161 1.30e-22 c.97.1.2 94185 2b3zA 373 5.86e-22 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 7.94e-22 c.97.1.2 114004 2hvwA 184 1.65e-21 2hxvA 360 4.07e-21 c.71.1.2,c.97.1.2 136859,136860 1ctt 294 1.20e-13 1cttA 294 1.73e-13 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 0.000144 2fr5A 146 0.000490 c.97.1.1 133965 1uwzA 136 0.001373 c.97.1.1 108081 1jtkA 136 0.002986 c.97.1.1 71862 1r5tA 142 0.005006 c.97.1.1 104812 2nytA 190 0.03780 2bl9A 238 0.06186 1wn5A 130 0.3154 c.97.1.1 121082 2z3hA 130 0.8738 3cngA 189 1.091 1zy7A 403 1.256 1sdeA 347 2.010 e.3.1.1 112073 2z00A 426 2.833 2qxfA 482 3.316 2pbtA 134 4.575 2qjtA 352 5.391 3pte 349 5.426 2ffyA 358 6.235 e.3.1.1 133394 2pqvA 154 6.782 2id0A 644 6.917 1zkjA 359 8.197 2fb1A 226 9.604 a.4.5.68,d.113.1.6 133225,133226 1thfD 253 10.24 c.1.2.1 28535 2hb5A 164 10.37 1pwgA 349 10.37 e.3.1.1 104340 1yqsA 349 10.42 e.3.1.1 123899 1mzuA 129 10.75 d.110.3.1 79714 1l0gA 358 12.22 e.3.1.1 73400 1rgzA 363 12.65 e.3.1.1 97457 1vh7A 265 13.17 c.1.2.1 100646 2i8tA 167 15.20 1mp4A 292 15.23 c.68.1.6 79376 2dkoA 146 16.60 1k20A 310 17.73 c.107.1.1 68027 2o1cA 150 18.34 2ix0A 663 18.69 1fsyA 358 19.72 e.3.1.1 60016 2yvdA 431 20.46 1ttzA 87 21.09 c.47.1.1 107309 1j53A 186 21.38 c.55.3.5 77076 1uuqA 440 22.41 c.1.8.3 100015 2ef7A 133 23.60 1vhzA 198 24.09 d.113.1.1 100718 1i0lA 221 24.60 c.61.1.1 71096 2i7vA 459 24.64 1v8yA 170 24.71 d.113.1.1 113581 1rgyA 360 24.90 e.3.1.1 97456 2guiA 194 26.20 c.55.3.5 135737 1ci9A 392 26.53 e.3.1.1 64767 1sc3A 178 26.98 c.17.1.1 105416 1jl1A 155 28.25 c.55.3.1 66821 3bk2A 562 28.62 1f21A 155 28.88 c.55.3.1 33550 1v7zA 260 29.36 c.125.1.1 100488 2dkfA 431 30.09 2r14A 377 30.91 2puzA 419 32.25 2igiA 180 32.88 1kjqA 391 34.21 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2ch5A 347 34.36 c.55.1.5,c.55.1.5 130453,130454 1v82A 253 34.38 c.68.1.7 108415 1wyzA 242 35.22 c.90.1.1 121471 2drwA 363 35.70 e.3.1.1 131674 2j7vA 298 37.07 1mb4A 370 39.72 c.2.1.3,d.81.1.1 78908,78909 2fmlA 273 39.99 a.4.5.68,d.113.1.6 133778,133779 2fkbA 180 40.53 d.113.1.2 133650 1i2sA 282 40.53 e.3.1.1 71104 1ido 192 40.78 1bueA 265 41.39 e.3.1.1 42727 2d0jA 246 42.19 2dwcA 433 42.28 1hzoA 271 42.42 e.3.1.1 71092 1rm6C 161 42.45 a.56.1.1,d.15.4.2 111876,111877 2i5eA 211 42.90 1bmqA 167 42.97 c.17.1.1 30998 1izcA 339 43.03 c.1.12.5 83838 1pyoA 167 45.41 c.17.1.1 95370 2gwnA 452 46.12 1t0aA 159 47.08 d.79.5.1 112192 1jr8A 117 49.02 a.24.15.1 67115 2a0nA 265 50.00 c.1.2.1 125961 2bx2L 517 50.75 1dbqA 289 50.86 c.93.1.1 35666 2fb5A 205 52.13 d.320.1.1 133235 2z0hA 197 53.78 3c3mA 138 54.49 1ohvA 472 54.77 c.67.1.4 93031 2iw0A 254 55.63 c.6.2.3 137737 2b0vA 153 56.88 d.113.1.1 127650 2a6tA 271 58.27 a.242.1.1,d.113.1.7 126309,126310 3cu0A 281 58.36 1b2pA 119 58.72 b.78.1.1 27998 2ts1 419 59.41 2e7pA 116 61.10 1qtnA 164 61.22 c.17.1.1 30999 1jykA 254 61.78 c.68.1.13 67458 1iv3A 152 62.56 d.79.5.1 76828 2hjhA 354 62.59 2ht9A 146 62.70 1k68A 140 62.93 c.23.1.1 90943 1jl2A 156 63.68 c.55.3.1 66822 2pw9A 268 63.98 1xrtA 467 64.53 b.92.1.3,c.1.9.6 122258,122259 1ox6A 555 64.56 c.1.2.1,c.23.16.1 87505,87506 3bq9A 460 65.33 2pajA 492 66.25 1mldA 314 66.71 c.2.1.5,d.162.1.1 30122,42089 2cf7A 165 68.21 1h5yA 253 69.02 c.1.2.1 65638 1iysA 262 70.54 e.3.1.1 90723 1tvfA 369 71.08 b.105.1.2,e.3.1.1 107358,107359 2yy8A 201 71.23 1j54A 186 71.36 c.55.3.5 77077 1vk9A 151 72.26 c.97.1.3 108640 2fvvA 194 72.47 d.113.1.1 134226 2flsA 132 72.87 1rrmA 386 73.58 e.22.1.2 105081 1vljA 407 74.27 e.22.1.2 108832 1vyrA 364 75.60 c.1.4.1 108906 1q77A 138 76.22 c.26.2.4 96023 1eu1A 780 76.62 b.52.2.2,c.81.1.1 26903,35311 2rn2 155 76.87 1h5rA 293 78.68 c.68.1.6 65623 1jflA 228 79.31 c.78.2.1,c.78.2.1 71656,71657 2i0oA 304 79.37 2dhoA 235 79.53 1fxoA 293 80.13 c.68.1.6 34524 1glcG 501 81.04 c.55.1.4,c.55.1.4 33519,33520 1lvwA 295 82.35 c.68.1.6 84723 1v84A 253 82.41 c.68.1.7 108419 1zczA 464 83.31 c.24.1.3,c.97.1.4 124923,124924 2odsA 265 84.42 2cmdA 312 85.10 c.2.1.5,d.162.1.1 30135,42102 2dcfA 392 85.61 1jilA 420 85.69 c.26.1.1 66745 1zbfA 142 87.50 c.55.3.1 124850