# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 3.67e-26 2b3jA 159 4.32e-26 c.97.1.2 127787 1z3aA 168 1.08e-25 c.97.1.2 124396 1wwrA 171 3.57e-25 c.97.1.2 121366 1wkqA 164 4.69e-25 c.97.1.2 109393 2g84A 197 1.33e-24 c.97.1.2 134766 1tiyA 164 4.75e-24 c.97.1.2 107012 2a8nA 144 1.90e-23 c.97.1.2 126408 1p6oA 161 5.09e-22 c.97.1.2 94185 2b3zA 373 1.43e-21 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 3.01e-21 c.97.1.2 114004 2hvwA 184 8.46e-21 2hxvA 360 1.18e-20 c.71.1.2,c.97.1.2 136859,136860 1ctt 294 3.65e-13 1cttA 294 5.40e-13 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 0.000737 2fr5A 146 0.001606 c.97.1.1 133965 1uwzA 136 0.005706 c.97.1.1 108081 1jtkA 136 0.01167 c.97.1.1 71862 1r5tA 142 0.02655 c.97.1.1 104812 2nytA 190 0.03353 2bl9A 238 0.07501 1wn5A 130 1.261 c.97.1.1 121082 1zy7A 403 1.636 3cngA 189 2.521 2z3hA 130 3.161 2qxfA 482 3.658 2id0A 644 4.430 1sdeA 347 5.827 e.3.1.1 112073 2z00A 426 7.536 1mzuA 129 8.007 d.110.3.1 79714 2pbtA 134 9.552 2hb5A 164 13.20 2qjtA 352 13.55 1thfD 253 14.14 c.1.2.1 28535 1vh7A 265 15.62 c.1.2.1 100646 2o1cA 150 15.82 3pte 349 17.48 2ix0A 663 17.88 2pqvA 154 18.14 2fb1A 226 18.22 a.4.5.68,d.113.1.6 133225,133226 2ffyA 358 18.42 e.3.1.1 133394 1ttzA 87 20.52 c.47.1.1 107309 1mp4A 292 21.27 c.68.1.6 79376 1v7zA 260 22.61 c.125.1.1 100488 1k20A 310 23.38 c.107.1.1 68027 1i0lA 221 24.18 c.61.1.1 71096 2fmlA 273 24.40 a.4.5.68,d.113.1.6 133778,133779 1zkjA 359 24.79 2r14A 377 25.48 2i8tA 167 26.73 1ido 192 27.66 2guiA 194 28.71 c.55.3.5 135737 1yqsA 349 30.32 e.3.1.1 123899 2yvdA 431 31.44 2ef7A 133 32.51 2dkoA 146 32.59 1pwgA 349 34.11 e.3.1.1 104340 1ox6A 555 34.63 c.1.2.1,c.23.16.1 87505,87506 1v8yA 170 34.84 d.113.1.1 113581 2pajA 492 34.93 2iw0A 254 35.64 c.6.2.3 137737 2fkbA 180 36.67 d.113.1.2 133650 1rm6C 161 36.81 a.56.1.1,d.15.4.2 111876,111877 1uuqA 440 39.37 c.1.8.3 100015 2ch5A 347 39.94 c.55.1.5,c.55.1.5 130453,130454 1l0gA 358 40.06 e.3.1.1 73400 1sc3A 178 42.19 c.17.1.1 105416 1izcA 339 42.38 c.1.12.5 83838 2igiA 180 42.63 1v82A 253 43.46 c.68.1.7 108415 2dkfA 431 43.64 1j53A 186 43.86 c.55.3.5 77076 2fvvA 194 44.89 d.113.1.1 134226 2d0jA 246 45.10 1vk9A 151 45.13 c.97.1.3 108640 1mb4A 370 45.17 c.2.1.3,d.81.1.1 78908,78909 2bx2L 517 45.25 1ci9A 392 45.29 e.3.1.1 64767 1rgzA 363 45.63 e.3.1.1 97457 2i7vA 459 45.70 2a6tA 271 46.77 a.242.1.1,d.113.1.7 126309,126310 1wyzA 242 47.11 c.90.1.1 121471 2i5eA 211 47.89 1potA 325 50.26 c.94.1.1 35807 1t0aA 159 51.23 d.79.5.1 112192 3bq9A 460 52.43 1jr8A 117 53.45 a.24.15.1 67115 1dbqA 289 54.57 c.93.1.1 35666 1nksA 194 54.90 c.37.1.1 31886 2ts1 419 55.60 1zbfA 142 55.89 c.55.3.1 124850 1fsyA 358 57.53 e.3.1.1 60016 1n62A 166 57.86 a.56.1.1,d.15.4.2 80090,80091 2drwA 363 57.95 e.3.1.1 131674 2hjhA 354 58.72 1jl2A 156 58.72 c.55.3.1 66822 1jykA 254 59.46 c.68.1.13 67458 1ohvA 472 61.30 c.67.1.4 93031 2puzA 419 61.42 1iv3A 152 61.55 d.79.5.1 76828 1i2sA 282 62.94 e.3.1.1 71104 1llaA 628 63.20 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1vyrA 364 63.77 c.1.4.1 108906 1vhzA 198 63.89 d.113.1.1 100718 1jl1A 155 63.99 c.55.3.1 66821 1bmqA 167 64.51 c.17.1.1 30998 3bk2A 562 65.20 1mldA 314 67.06 c.2.1.5,d.162.1.1 30122,42089 1rgyA 360 68.86 e.3.1.1 97456 1bueA 265 68.88 e.3.1.1 42727 1w0hA 204 69.14 c.55.3.5 114064 2yy8A 201 70.15 2z0hA 197 71.95 1pyoA 167 72.37 c.17.1.1 95370 1h5yA 253 74.06 c.1.2.1 65638 2hjgA 436 75.04 2b06A 155 75.11 d.113.1.1 127624 2a0nA 265 75.74 c.1.2.1 125961 1b2pA 119 76.48 b.78.1.1 27998 3c3mA 138 76.59 1gx1A 160 76.73 d.79.5.1 70675 2odsA 265 77.23 2j7vA 298 77.37 1tvfA 369 78.25 b.105.1.2,e.3.1.1 107358,107359 1us6A 102 79.49 a.2.13.1 107999 1v7rA 186 80.61 c.51.4.1 100482 1j54A 186 85.07 c.55.3.5 77077 2qgqA 304 86.02 1lfwA 470 87.70 c.56.5.4,d.58.19.1 77942,77943 3cu0A 281 89.37