# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 2.38e-26 2b3jA 159 2.50e-26 c.97.1.2 127787 1z3aA 168 7.25e-26 c.97.1.2 124396 1wwrA 171 1.93e-25 c.97.1.2 121366 1wkqA 164 2.90e-25 c.97.1.2 109393 2g84A 197 6.31e-25 c.97.1.2 134766 1tiyA 164 2.90e-24 c.97.1.2 107012 2a8nA 144 1.28e-23 c.97.1.2 126408 1p6oA 161 3.91e-22 c.97.1.2 94185 2b3zA 373 9.14e-22 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 1.75e-21 c.97.1.2 114004 2hvwA 184 6.05e-21 2hxvA 360 8.67e-21 c.71.1.2,c.97.1.2 136859,136860 1ctt 294 2.66e-13 1cttA 294 4.04e-13 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 0.000569 2fr5A 146 0.001000 c.97.1.1 133965 1uwzA 136 0.003569 c.97.1.1 108081 1jtkA 136 0.009069 c.97.1.1 71862 1r5tA 142 0.02005 c.97.1.1 104812 2nytA 190 0.03921 2bl9A 238 0.05762 1wn5A 130 0.8248 c.97.1.1 121082 1zy7A 403 1.262 2z3hA 130 1.802 2qxfA 482 2.733 3cngA 189 2.890 1sdeA 347 3.466 e.3.1.1 112073 1mzuA 129 5.155 d.110.3.1 79714 2z00A 426 6.062 2id0A 644 6.284 2pbtA 134 8.669 3pte 349 10.15 2ffyA 358 11.27 e.3.1.1 133394 2hb5A 164 11.99 2qjtA 352 12.33 2o1cA 150 14.45 1mp4A 292 14.69 c.68.1.6 79376 1i0lA 221 15.30 c.61.1.1 71096 1thfD 253 16.22 c.1.2.1 28535 1zkjA 359 17.32 1yqsA 349 17.39 e.3.1.1 123899 1vh7A 265 17.46 c.1.2.1 100646 2fb1A 226 17.75 a.4.5.68,d.113.1.6 133225,133226 2dkoA 146 19.34 1ttzA 87 19.56 c.47.1.1 107309 2pqvA 154 20.27 1pwgA 349 21.45 e.3.1.1 104340 2ix0A 663 22.07 1k20A 310 22.23 c.107.1.1 68027 2r14A 377 22.52 2yvdA 431 24.84 1rgzA 363 25.37 e.3.1.1 97457 1rm6C 161 25.69 a.56.1.1,d.15.4.2 111876,111877 2i8tA 167 26.94 1l0gA 358 27.23 e.3.1.1 73400 2guiA 194 28.44 c.55.3.5 135737 1sc3A 178 29.86 c.17.1.1 105416 2ef7A 133 31.04 1v7zA 260 31.61 c.125.1.1 100488 2fmlA 273 31.94 a.4.5.68,d.113.1.6 133778,133779 2ch5A 347 35.59 c.55.1.5,c.55.1.5 130453,130454 1wyzA 242 36.26 c.90.1.1 121471 2dkfA 431 36.67 1ci9A 392 36.71 e.3.1.1 64767 2i7vA 459 37.12 1fsyA 358 37.15 e.3.1.1 60016 1v8yA 170 37.16 d.113.1.1 113581 1j53A 186 37.32 c.55.3.5 77076 2drwA 363 37.77 e.3.1.1 131674 2puzA 419 37.95 2igiA 180 38.16 2i5eA 211 38.45 2a6tA 271 38.99 a.242.1.1,d.113.1.7 126309,126310 1rgyA 360 39.58 e.3.1.1 97456 1iv3A 152 42.11 d.79.5.1 76828 1uuqA 440 43.12 c.1.8.3 100015 1v82A 253 43.80 c.68.1.7 108415 1ox6A 555 45.00 c.1.2.1,c.23.16.1 87505,87506 1bmqA 167 45.47 c.17.1.1 30998 1vk9A 151 45.86 c.97.1.3 108640 1jykA 254 45.89 c.68.1.13 67458 2d0jA 246 46.24 2fvvA 194 46.70 d.113.1.1 134226 1t0aA 159 46.91 d.79.5.1 112192 2pajA 492 47.52 3bq9A 460 48.04 1nksA 194 49.43 c.37.1.1 31886 2bx2L 517 49.60 1izcA 339 49.91 c.1.12.5 83838 1n62A 166 49.97 a.56.1.1,d.15.4.2 80090,80091 1potA 325 50.59 c.94.1.1 35807 1i2sA 282 51.75 e.3.1.1 71104 3c3mA 138 52.29 1jr8A 117 52.70 a.24.15.1 67115 1bueA 265 53.49 e.3.1.1 42727 3bk2A 562 53.84 2fkbA 180 54.07 d.113.1.2 133650 2hjhA 354 55.66 1dbqA 289 57.04 c.93.1.1 35666 2ts1 419 57.99 1pyoA 167 58.76 c.17.1.1 95370 2z0hA 197 59.36 1fxoA 293 61.15 c.68.1.6 34524 1ido 192 61.31 2iw0A 254 61.95 c.6.2.3 137737 2a0nA 265 63.26 c.1.2.1 125961 2odsA 265 63.56 1hzoA 271 63.95 e.3.1.1 71092 1vhzA 198 65.50 d.113.1.1 100718 1gx1A 160 66.69 d.79.5.1 70675 1mb4A 370 67.46 c.2.1.3,d.81.1.1 78908,78909 2cmdA 312 68.37 c.2.1.5,d.162.1.1 30135,42102 1w0hA 204 68.44 c.55.3.5 114064 2j7vA 298 68.54 1b2pA 119 70.54 b.78.1.1 27998 1lvwA 295 71.74 c.68.1.6 84723 2o9cA 342 72.16 1h5yA 253 72.65 c.1.2.1 65638 1jl2A 156 73.22 c.55.3.1 66822 2ehgA 149 73.56 1ohvA 472 73.75 c.67.1.4 93031 1q77A 138 74.83 c.26.2.4 96023 1mldA 314 75.51 c.2.1.5,d.162.1.1 30122,42089 1llaA 628 76.97 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 2gwnA 452 77.87 1qtnA 164 77.92 c.17.1.1 30999 1jl1A 155 79.06 c.55.3.1 66821 1njgA 250 79.25 c.37.1.20 85785 1kjqA 391 81.68 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2b06A 155 82.87 d.113.1.1 127624 1zbfA 142 84.19 c.55.3.1 124850 1h5rA 293 87.14 c.68.1.6 65623 168lA 164 88.59 d.2.1.3 36975 1tvfA 369 89.15 b.105.1.2,e.3.1.1 107358,107359 1jilA 420 89.23 c.26.1.1 66745 1zczA 464 89.49 c.24.1.3,c.97.1.4 124923,124924 3cu0A 281 89.75