# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2b3jA 159 1.10e-25 c.97.1.2 127787 2nx8A 179 1.12e-25 1z3aA 168 5.64e-25 c.97.1.2 124396 1wwrA 171 1.18e-24 c.97.1.2 121366 2g84A 197 7.57e-24 c.97.1.2 134766 1wkqA 164 1.83e-23 c.97.1.2 109393 1tiyA 164 5.10e-23 c.97.1.2 107012 2a8nA 144 1.39e-22 c.97.1.2 126408 2b3zA 373 4.59e-21 c.71.1.2,c.97.1.2 127807,127808 1p6oA 161 6.94e-21 c.97.1.2 94185 1vq2A 193 1.65e-20 c.97.1.2 114004 2hxvA 360 4.33e-20 c.71.1.2,c.97.1.2 136859,136860 2hvwA 184 8.63e-20 1ctt 294 1.10e-10 1cttA 294 1.39e-10 c.97.1.1,c.97.1.1 36022,36023 2fr5A 146 0.000157 c.97.1.1 133965 3b8fA 142 0.000220 1uwzA 136 0.000288 c.97.1.1 108081 1jtkA 136 0.000532 c.97.1.1 71862 1r5tA 142 0.000773 c.97.1.1 104812 2nytA 190 0.02135 2z3hA 130 0.08290 2bl9A 238 0.5850 1wn5A 130 0.7202 c.97.1.1 121082 1zy7A 403 1.093 3cngA 189 4.429 1zkjA 359 5.773 1sc3A 178 6.533 c.17.1.1 105416 2ffyA 358 7.710 e.3.1.1 133394 2dkoA 146 8.400 1rgyA 360 8.585 e.3.1.1 97456 1rgzA 363 9.081 e.3.1.1 97457 2hb5A 164 9.484 1l0gA 358 9.757 e.3.1.1 73400 2r14A 377 12.17 2pqvA 154 12.41 2g76A 335 12.90 2pbtA 134 14.51 1mp4A 292 14.53 c.68.1.6 79376 1ci9A 392 14.59 e.3.1.1 64767 1fsyA 358 14.70 e.3.1.1 60016 2ar9A 278 14.80 2yxlA 450 16.39 1ghsA 306 16.89 c.1.8.3 28840 2qjtA 352 16.92 2a9fA 398 17.65 2o1cA 150 18.43 2z00A 426 19.20 2blnA 305 20.48 b.46.1.1,c.65.1.1 128734,128735 1bmqA 167 20.69 c.17.1.1 30998 1h5rA 293 27.31 c.68.1.6 65623 1xrsB 262 30.02 c.23.6.1,d.230.4.1 115884,115885 1wd5A 208 31.83 c.61.1.1 114524 1pyoA 167 32.33 c.17.1.1 95370 2i5eA 211 33.72 1eu1A 780 35.50 b.52.2.2,c.81.1.1 26903,35311 1vhzA 198 36.25 d.113.1.1 100718 2cygA 312 36.78 c.1.8.3 131025 1g5cA 170 37.69 c.53.2.1 60264 1f75A 249 41.13 c.101.1.1 59662 1mb4A 370 42.66 c.2.1.3,d.81.1.1 78908,78909 1vl6A 388 43.31 c.2.1.7,c.58.1.3 108724,108725 1vicA 262 43.59 c.68.1.13 100756 1nmsA 249 44.43 c.17.1.1 85879 1jr8A 117 45.27 a.24.15.1 67115 1t0aA 159 45.69 d.79.5.1 112192 2a6tA 271 46.73 a.242.1.1,d.113.1.7 126309,126310 1sdeA 347 47.18 e.3.1.1 112073 1fxoA 293 48.07 c.68.1.6 34524 2hjhA 354 48.60 2qxfA 482 49.31 2i8tA 167 49.37 1gx1A 160 52.59 d.79.5.1 70675 1thfD 253 53.03 c.1.2.1 28535 1iv3A 152 53.91 d.79.5.1 76828 2p90A 319 54.09 1lvwA 295 54.13 c.68.1.6 84723 3ce9A 354 55.12 1gpjA 404 55.18 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1twdA 256 55.71 c.1.30.1 107397 1e4fT 419 55.88 c.55.1.1,c.55.1.1 33453,33454 1vk9A 151 56.03 c.97.1.3 108640 1mp1A 111 56.76 a.188.1.1 91382 1xbyA 216 57.36 c.1.2.3 121846 1q77A 138 57.74 c.26.2.4 96023 2bx2L 517 58.46 2fcfA 103 59.03 b.36.1.1 133267 3pte 349 61.22 2bfdA 400 61.62 2b06A 155 62.71 d.113.1.1 127624 2hbvA 334 63.42 c.1.9.15 136320 1dssG 333 66.93 c.2.1.3,d.81.1.1 30022,39937 1ei5A 520 67.81 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2qgnA 322 68.02 2fb1A 226 68.81 a.4.5.68,d.113.1.6 133225,133226 1x7yA 400 69.41 c.36.1.11 114944 1rm6C 161 70.99 a.56.1.1,d.15.4.2 111876,111877 1qtnA 164 71.65 c.17.1.1 30999 1spvA 184 71.81 c.50.1.2 98957 1v8yA 170 72.22 d.113.1.1 113581 168lA 164 74.41 d.2.1.3 36975 1yisA 478 74.95 2fmlA 273 75.21 a.4.5.68,d.113.1.6 133778,133779 1omhA 293 77.57 d.89.1.5 93348 1ekjA 221 79.14 c.53.2.1 33364 1kjqA 391 79.92 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1tzyD 103 81.18 a.22.1.1 107533 1fvgA 199 81.74 d.58.28.1 39408 2pq7A 220 83.44 2bdqA 224 86.21 1jflA 228 86.24 c.78.2.1,c.78.2.1 71656,71657 176lA 164 86.71 d.2.1.3 36942 1y81A 138 87.29 c.2.1.8 122731 2ddhA 661 88.35 a.29.3.2,a.29.3.2,e.6.1.2 131394,131395,131396 1nf3C 128 89.10 b.36.1.1 85596