# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2b3jA 159 4.78e-26 c.97.1.2 127787 2nx8A 179 6.86e-26 1z3aA 168 1.27e-25 c.97.1.2 124396 1wwrA 171 3.21e-25 c.97.1.2 121366 1wkqA 164 7.79e-25 c.97.1.2 109393 1tiyA 164 3.10e-24 c.97.1.2 107012 2g84A 197 4.71e-24 c.97.1.2 134766 2a8nA 144 1.53e-23 c.97.1.2 126408 1p6oA 161 3.91e-22 c.97.1.2 94185 2b3zA 373 7.96e-21 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 2.59e-20 c.97.1.2 114004 2hvwA 184 3.23e-20 2hxvA 360 1.96e-19 c.71.1.2,c.97.1.2 136859,136860 1cttA 294 4.62e-13 c.97.1.1,c.97.1.1 36022,36023 1ctt 294 4.86e-13 3b8fA 142 0.000173 2fr5A 146 0.000301 c.97.1.1 133965 1uwzA 136 0.000929 c.97.1.1 108081 1jtkA 136 0.002056 c.97.1.1 71862 1r5tA 142 0.002979 c.97.1.1 104812 2nytA 190 0.04852 1wn5A 130 0.1037 c.97.1.1 121082 2bl9A 238 0.1358 2z3hA 130 0.2671 1zy7A 403 0.8711 3cngA 189 1.367 2z00A 426 2.618 1sdeA 347 3.000 e.3.1.1 112073 2id0A 644 3.341 2ffyA 358 4.024 e.3.1.1 133394 2qxfA 482 4.501 2pbtA 134 4.537 2qjtA 352 5.357 1zkjA 359 6.474 1l0gA 358 7.043 e.3.1.1 73400 2pqvA 154 7.419 3pte 349 7.678 1rgzA 363 8.211 e.3.1.1 97457 1mzuA 129 9.440 d.110.3.1 79714 2ix0A 663 10.20 1rgyA 360 11.10 e.3.1.1 97456 1fsyA 358 12.23 e.3.1.1 60016 1v7zA 260 13.35 c.125.1.1 100488 1pwgA 349 13.56 e.3.1.1 104340 1yqsA 349 14.81 e.3.1.1 123899 2i8tA 167 15.27 2pw9A 268 15.99 1ci9A 392 16.53 e.3.1.1 64767 2ef7A 133 18.57 2o1cA 150 18.65 2hb5A 164 19.41 1uuqA 440 19.61 c.1.8.3 100015 1thfD 253 20.19 c.1.2.1 28535 1mp4A 292 21.29 c.68.1.6 79376 2fb1A 226 21.74 a.4.5.68,d.113.1.6 133225,133226 1vh7A 265 22.03 c.1.2.1 100646 2j7vA 298 22.45 1gkrA 458 25.12 b.92.1.3,c.1.9.6 70251,70252 2drwA 363 25.18 e.3.1.1 131674 1bueA 265 25.66 e.3.1.1 42727 2a6tA 271 26.58 a.242.1.1,d.113.1.7 126309,126310 1jykA 254 26.99 c.68.1.13 67458 1v8yA 170 27.40 d.113.1.1 113581 2r14A 377 27.75 1iv3A 152 28.43 d.79.5.1 76828 2fb5A 205 30.90 d.320.1.1 133235 2i5eA 211 31.17 2gwnA 452 31.61 1t0aA 159 31.85 d.79.5.1 112192 1zczA 464 33.52 c.24.1.3,c.97.1.4 124923,124924 2iw0A 254 33.82 c.6.2.3 137737 1tvfA 369 35.13 b.105.1.2,e.3.1.1 107358,107359 2pbeA 294 35.30 2igiA 180 35.48 1vhzA 198 36.57 d.113.1.1 100718 1ttzA 87 39.29 c.47.1.1 107309 1ceo 343 40.10 1gx1A 160 40.54 d.79.5.1 70675 2guiA 194 42.32 c.55.3.5 135737 1i0lA 221 43.23 c.61.1.1 71096 1bmqA 167 44.91 c.17.1.1 30998 1k20A 310 45.80 c.107.1.1 68027 1zc6A 305 45.89 c.55.1.5,c.55.1.5 124888,124889 1vk9A 151 47.11 c.97.1.3 108640 2i7vA 459 47.29 2o9cA 342 47.72 1kjqA 391 49.07 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1j53A 186 50.76 c.55.3.5 77076 1eu1A 780 50.94 b.52.2.2,c.81.1.1 26903,35311 1vzwA 244 50.96 c.1.2.1 120553 2rihA 141 52.04 1ohvA 472 52.47 c.67.1.4 93031 1g0cA 364 53.06 c.1.8.3 60165 1lvwA 295 56.25 c.68.1.6 84723 1llaA 628 57.05 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1ex2A 189 57.28 c.51.4.2 33225 3bq9A 460 57.76 2qjoA 341 57.80 1wyzA 242 58.04 c.90.1.1 121471 2b0vA 153 58.35 d.113.1.1 127650 1j54A 186 60.13 c.55.3.5 77077 2ch5A 347 60.50 c.55.1.5,c.55.1.5 130453,130454 1sc3A 178 61.53 c.17.1.1 105416 2cf7A 165 62.34 1izcA 339 62.72 c.1.12.5 83838 1pzsA 208 62.74 b.1.8.1 104397 2gagA 965 63.21 1b2pA 119 63.73 b.78.1.1 27998 1qtnA 164 64.52 c.17.1.1 30999 2fmlA 273 67.25 a.4.5.68,d.113.1.6 133778,133779 1pvmA 184 69.43 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1xrtA 467 69.71 b.92.1.3,c.1.9.6 122258,122259 1k2eA 156 70.03 d.113.1.1 72010 1xkfA 133 70.15 d.37.1.1,d.37.1.1 122077,122078 1gkpA 458 71.29 b.92.1.3,c.1.9.6 70231,70232 2cy2A 174 71.96 d.108.1.1 131016 1f21A 155 72.15 c.55.3.1 33550 1zbfA 142 72.98 c.55.3.1 124850 2qhsA 237 73.60 2ivnA 330 73.80 2dcfA 392 73.95 1g6aA 271 74.94 e.3.1.1 42704 2puzA 419 75.47 1ybqB 390 75.72 2a0nA 265 76.34 c.1.2.1 125961 1lfwA 470 76.83 c.56.5.4,d.58.19.1 77942,77943 3pyp 125 77.46 2dkoA 146 77.47 2i0oA 304 77.93 1nwzA 125 78.67 d.110.3.1 86370 2hi1A 330 79.08 1tzyD 103 79.27 a.22.1.1 107533 3ciwA 348 79.38 1kcxA 518 81.72 b.92.1.3,c.1.9.6 90953,90954 2b06A 155 82.57 d.113.1.1 127624 1onxA 390 82.69 b.92.1.7,c.1.9.13 87176,87177 2zogA 479 84.60 1h5rA 293 86.66 c.68.1.6 65623 2dhoA 235 87.72 1jr8A 117 88.36 a.24.15.1 67115