# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2b3jA 159 1.16e-20 c.97.1.2 127787 2nx8A 179 1.54e-20 1z3aA 168 3.26e-20 c.97.1.2 124396 1wwrA 171 8.14e-20 c.97.1.2 121366 1wkqA 164 2.02e-19 c.97.1.2 109393 2a8nA 144 3.42e-19 c.97.1.2 126408 2g84A 197 3.88e-19 c.97.1.2 134766 1tiyA 164 8.74e-19 c.97.1.2 107012 1p6oA 161 1.87e-17 c.97.1.2 94185 2hvwA 184 2.50e-16 1vq2A 193 1.15e-15 c.97.1.2 114004 2b3zA 373 4.83e-15 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 4.64e-13 c.71.1.2,c.97.1.2 136859,136860 1cttA 294 1.35e-10 c.97.1.1,c.97.1.1 36022,36023 1ctt 294 1.38e-10 3b8fA 142 0.007638 1r5tA 142 0.01341 c.97.1.1 104812 2fr5A 146 0.02139 c.97.1.1 133965 1uwzA 136 0.05225 c.97.1.1 108081 1jtkA 136 0.1038 c.97.1.1 71862 2z3hA 130 0.1153 2eceA 462 0.3394 2nytA 190 0.6237 1j6pA 418 0.7476 b.92.1.4,c.1.9.9 77089,77090 1wn5A 130 1.157 c.97.1.1 121082 2bl9A 238 2.113 1wzlA 585 2.194 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2hbvA 334 2.647 c.1.9.15 136320 2id0A 644 3.010 1r9jA 673 5.034 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1ile 821 5.872 2ts1 419 6.054 1qmeA 702 6.825 d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1ceo 343 9.587 1zy7A 403 14.14 1l0gA 358 14.29 e.3.1.1 73400 2ch5A 347 15.08 c.55.1.5,c.55.1.5 130453,130454 1l1zA 274 17.05 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1rgyA 360 21.31 e.3.1.1 97456 1y8qA 346 22.38 1p1mA 406 23.60 b.92.1.4,c.1.9.9 87696,87697 1ak0A 270 23.78 a.124.1.2 19345 1xvlA 321 23.79 c.92.2.2 122380 1lfwA 470 24.07 c.56.5.4,d.58.19.1 77942,77943 1e4fT 419 24.42 c.55.1.1,c.55.1.1 33453,33454 2c6cA 707 24.42 a.48.2.1,c.8.4.1,c.56.5.5 129989,129990,129991 2nycA 144 24.59 d.37.1.1 138812 1vcdA 126 24.81 d.113.1.1 119970 2bryA 497 25.11 2zmvA 227 25.89 1j9yA 385 26.14 c.1.8.3 62791 1ceoA 343 26.70 c.1.8.3 28808 1yljA 263 27.21 2vecA 256 27.26 2qmjA 870 28.15 1r64A 481 28.20 b.18.1.20,c.41.1.1 97140,97141 2ffyA 358 28.41 e.3.1.1 133394 1kktA 511 29.01 a.102.2.1 68687 1fsuA 492 29.28 c.76.1.2 35032 2bcgG 453 30.56 c.3.1.3,c.3.1.3,d.16.1.6 128282,128283,128284 2a0nA 265 31.36 c.1.2.1 125961 2pbtA 134 32.80 2ix0A 663 33.05 1qf6A 642 33.23 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 2d5wA 603 33.65 1ido 192 34.64 1iv3A 152 34.99 d.79.5.1 76828 1qh8A 478 35.32 c.92.2.3 35633 2i8tA 167 35.62 1mzuA 129 35.84 d.110.3.1 79714 1dseA 292 36.76 a.93.1.1 59130 2r14A 377 38.76 2bfdB 345 39.72 c.36.1.7,c.48.1.2 128419,128420 2dkhA 639 40.26 2id4A 503 40.61 b.18.1.20,c.41.1.1 137265,137266 1cs0A 1073 40.86 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1o0xA 262 41.60 d.127.1.1 80755 2pqvA 154 44.18 2zf5O 497 44.19 2a8lA 420 44.93 1pguA 615 45.27 b.69.4.1,b.69.4.1 88069,88070 2oogA 287 45.40 1ea9C 583 46.12 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 2qg7A 458 46.35 1w36C 1122 46.52 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1peqA 714 47.19 a.98.1.1,c.7.1.2 104131,104132 1k77A 260 48.01 c.1.15.5 72096 2a6tA 271 48.13 a.242.1.1,d.113.1.7 126309,126310 2idbA 505 48.26 b.45.1.3,d.333.1.1 137270,137271 2i49A 429 49.26 2icjA 233 50.38 1iyeA 309 51.99 e.17.1.1 83786 1wyuB 474 52.04 c.67.1.7 121453 3bk2A 562 52.07 1mf7A 194 52.57 c.62.1.1 84937 1qw9A 502 54.14 b.71.1.2,c.1.8.3 96466,96467 2hpkA 208 55.95 1z7dA 433 56.07 c.67.1.4 124600 1x84A 189 57.70 d.113.1.2 121795 2qhsA 237 57.82 1sjyA 159 57.98 d.113.1.1 98900 1v7zA 260 58.17 c.125.1.1 100488 3pte 349 60.35 2nn6B 249 61.07 2oolA 337 62.81 2o1cA 150 62.99 1hbq 183 63.67 2q16A 219 63.94 1ynfA 458 64.01 d.126.1.7 123723 2hq6A 185 64.50 2j0wA 449 64.54 c.73.1.3,d.58.18.10,d.58.18.10 137923,137924,137925 1y0yA 353 64.84 b.49.3.1,c.56.5.4 122514,122515 2cy2A 174 64.88 d.108.1.1 131016 1edgA 380 65.35 c.1.8.3 28807 1yslA 402 67.14 1rgzA 363 68.25 e.3.1.1 97457 2b5eA 504 69.65 c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2 127888,127889,127890,127891 2e5aA 347 69.70 1mc0A 368 69.86 d.110.2.1,d.110.2.1 78937,78938 2igiA 180 69.89 3bsoA 510 70.93 2f4nA 273 71.49 2qxfA 482 71.77 2z1qA 577 72.36 1fsyA 358 73.46 e.3.1.1 60016 2ef7A 133 74.65 1w0hA 204 74.89 c.55.3.5 114064 2z3zA 706 75.76 2qt3A 403 75.80 1rrmA 386 76.91 e.22.1.2 105081 2hqyA 305 77.20 1v82A 253 77.55 c.68.1.7 108415 1uuqA 440 78.99 c.1.8.3 100015 3cngA 189 79.08 1lh0A 213 79.44 c.61.1.1 73896 1hcuA 503 79.62 a.102.2.1 65796 1thfD 253 79.65 c.1.2.1 28535 1lfaA 187 79.89 c.62.1.1 34122 1x9dA 538 80.92 a.102.2.1 121810 2gupA 292 81.30 c.55.1.10,c.55.1.10 135744,135745 1ecfA 504 81.56 c.61.1.1,d.153.1.1 34053,41820 1e6pA 499 81.61 b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 2qgmA 445 82.84 1t0aA 159 82.99 d.79.5.1 112192 1fs5A 266 83.09 c.124.1.1 65044 3cpxA 321 84.03 2avwA 311 86.38 1brmA 367 86.69 c.2.1.3,d.81.1.1 30030,39945 1gtkA 313 87.67 c.94.1.1,d.50.2.1 76346,76347 1o66A 275 88.56 c.1.12.8 92547