# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2b3jA 159 1.90e-25 c.97.1.2 127787 2nx8A 179 3.03e-25 1z3aA 168 4.74e-25 c.97.1.2 124396 1wwrA 171 1.64e-24 c.97.1.2 121366 1wkqA 164 2.57e-24 c.97.1.2 109393 2g84A 197 8.61e-24 c.97.1.2 134766 1tiyA 164 1.54e-23 c.97.1.2 107012 2a8nA 144 7.74e-23 c.97.1.2 126408 1p6oA 161 1.09e-21 c.97.1.2 94185 2b3zA 373 2.64e-20 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 7.89e-20 c.97.1.2 114004 2hvwA 184 9.98e-20 2hxvA 360 5.46e-19 c.71.1.2,c.97.1.2 136859,136860 1cttA 294 8.96e-13 c.97.1.1,c.97.1.1 36022,36023 1ctt 294 9.96e-13 3b8fA 142 0.000191 2fr5A 146 0.000425 c.97.1.1 133965 1uwzA 136 0.001667 c.97.1.1 108081 1jtkA 136 0.003601 c.97.1.1 71862 1r5tA 142 0.009690 c.97.1.1 104812 2nytA 190 0.04808 1wn5A 130 0.1526 c.97.1.1 121082 2bl9A 238 0.1691 2z3hA 130 0.3179 1zy7A 403 0.7723 3cngA 189 2.883 2qxfA 482 3.701 1sdeA 347 4.741 e.3.1.1 112073 2id0A 644 5.019 2z00A 426 5.946 2pbtA 134 7.101 1mzuA 129 7.702 d.110.3.1 79714 2pqvA 154 10.35 2qjtA 352 10.69 2ffyA 358 11.76 e.3.1.1 133394 3pte 349 11.96 2o1cA 150 12.03 1v7zA 260 12.16 c.125.1.1 100488 2ix0A 663 16.28 1zkjA 359 16.37 1uuqA 440 16.97 c.1.8.3 100015 2i8tA 167 16.99 2iw0A 254 20.00 c.6.2.3 137737 1l0gA 358 20.35 e.3.1.1 73400 1mp4A 292 20.63 c.68.1.6 79376 1thfD 253 21.28 c.1.2.1 28535 1pwgA 349 21.36 e.3.1.1 104340 2j7vA 298 21.81 1rgzA 363 22.42 e.3.1.1 97457 1vh7A 265 23.69 c.1.2.1 100646 2r14A 377 25.61 1yqsA 349 25.66 e.3.1.1 123899 2drwA 363 28.30 e.3.1.1 131674 2i5eA 211 28.57 1rgyA 360 30.08 e.3.1.1 97456 1jykA 254 30.20 c.68.1.13 67458 2o9cA 342 30.28 2a6tA 271 30.58 a.242.1.1,d.113.1.7 126309,126310 2fb1A 226 30.87 a.4.5.68,d.113.1.6 133225,133226 1ci9A 392 34.61 e.3.1.1 64767 2pbeA 294 35.10 1iv3A 152 37.16 d.79.5.1 76828 1fsyA 358 37.21 e.3.1.1 60016 1i0lA 221 37.27 c.61.1.1 71096 2ef7A 133 38.85 2igiA 180 38.86 1vk9A 151 40.62 c.97.1.3 108640 1t0aA 159 41.24 d.79.5.1 112192 1zc6A 305 43.32 c.55.1.5,c.55.1.5 124888,124889 1ceo 343 43.79 1lvwA 295 43.97 c.68.1.6 84723 2guiA 194 44.14 c.55.3.5 135737 3bq9A 460 46.34 1gx1A 160 47.56 d.79.5.1 70675 1bueA 265 47.88 e.3.1.1 42727 2pw9A 268 48.93 2ch5A 347 48.99 c.55.1.5,c.55.1.5 130453,130454 2hb5A 164 52.18 1izcA 339 52.60 c.1.12.5 83838 2hjgA 436 52.61 2fmlA 273 53.52 a.4.5.68,d.113.1.6 133778,133779 1v8yA 170 53.68 d.113.1.1 113581 2ts1 419 55.06 1ywfA 296 55.57 c.45.1.5 124144 2b06A 155 55.90 d.113.1.1 127624 1sz2A 332 56.86 c.55.1.7 112169 2cf7A 165 58.25 1wyzA 242 59.32 c.90.1.1 121471 1j53A 186 59.36 c.55.3.5 77076 1llaA 628 60.08 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1g0cA 364 61.33 c.1.8.3 60165 1gkrA 458 63.06 b.92.1.3,c.1.9.6 70251,70252 1tzyD 103 65.10 a.22.1.1 107533 1tvfA 369 66.18 b.105.1.2,e.3.1.1 107358,107359 1b2pA 119 66.19 b.78.1.1 27998 1ohvA 472 69.44 c.67.1.4 93031 2rihA 141 70.15 2i7vA 459 70.55 2a9fA 398 71.00 1j54A 186 71.55 c.55.3.5 77077 1pvmA 184 71.70 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1sc3A 178 74.07 c.17.1.1 105416 3pyp 125 74.08 1nwzA 125 74.20 d.110.3.1 86370 1bmqA 167 74.75 c.17.1.1 30998 2hi1A 330 75.24 1mldA 314 76.08 c.2.1.5,d.162.1.1 30122,42089 1eu1A 780 78.08 b.52.2.2,c.81.1.1 26903,35311 1vhzA 198 78.37 d.113.1.1 100718 1w0hA 204 80.81 c.55.3.5 114064 1pzsA 208 82.21 b.1.8.1 104397 1zbfA 142 82.68 c.55.3.1 124850 1potA 325 82.86 c.94.1.1 35807 1lfwA 470 83.41 c.56.5.4,d.58.19.1 77942,77943 1vzwA 244 85.00 c.1.2.1 120553 2fvvA 194 85.01 d.113.1.1 134226 1k2eA 156 85.34 d.113.1.1 72010 2cmdA 312 86.58 c.2.1.5,d.162.1.1 30135,42102 2b0vA 153 87.04 d.113.1.1 127650 2gwnA 452 87.04 1h5rA 293 87.16 c.68.1.6 65623 2cy2A 174 87.91 d.108.1.1 131016 1jr8A 117 88.84 a.24.15.1 67115 2a0nA 265 89.07 c.1.2.1 125961 1h75A 81 89.27 c.47.1.1 60716 1jl2A 156 89.56 c.55.3.1 66822