# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2b3jA 159 3.02e-25 c.97.1.2 127787 2nx8A 179 4.42e-25 1z3aA 168 1.28e-24 c.97.1.2 124396 1wwrA 171 2.58e-24 c.97.1.2 121366 1wkqA 164 3.06e-24 c.97.1.2 109393 2g84A 197 6.78e-24 c.97.1.2 134766 1tiyA 164 1.90e-23 c.97.1.2 107012 2a8nA 144 1.97e-22 c.97.1.2 126408 1p6oA 161 1.89e-21 c.97.1.2 94185 2b3zA 373 1.80e-20 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 2.81e-20 c.97.1.2 114004 2hvwA 184 1.55e-19 2hxvA 360 3.33e-19 c.71.1.2,c.97.1.2 136859,136860 1ctt 294 1.33e-12 1cttA 294 2.05e-12 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 0.000516 2fr5A 146 0.002664 c.97.1.1 133965 1uwzA 136 0.01194 c.97.1.1 108081 1jtkA 136 0.01827 c.97.1.1 71862 2nytA 190 0.02367 1r5tA 142 0.03417 c.97.1.1 104812 2bl9A 238 0.3128 1zy7A 403 1.182 1wn5A 130 2.368 c.97.1.1 121082 2z3hA 130 3.479 3cngA 189 5.506 2qxfA 482 5.738 2z00A 426 8.943 1sdeA 347 9.277 e.3.1.1 112073 2id0A 644 12.99 2ix0A 663 14.15 2pbtA 134 15.02 2ffyA 358 15.87 e.3.1.1 133394 1uuqA 440 17.95 c.1.8.3 100015 1llaA 628 18.49 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1n62A 166 21.77 a.56.1.1,d.15.4.2 80090,80091 2fmlA 273 22.08 a.4.5.68,d.113.1.6 133778,133779 1v7zA 260 22.11 c.125.1.1 100488 1zkjA 359 22.41 1rm6C 161 22.61 a.56.1.1,d.15.4.2 111876,111877 2o1cA 150 23.28 2iw0A 254 25.81 c.6.2.3 137737 2ef7A 133 25.82 1mzuA 129 28.29 d.110.3.1 79714 2pqvA 154 29.22 1l0gA 358 29.93 e.3.1.1 73400 1jr8A 117 30.85 a.24.15.1 67115 3pte 349 32.22 1i0lA 221 32.78 c.61.1.1 71096 1rgzA 363 33.47 e.3.1.1 97457 1yqsA 349 33.70 e.3.1.1 123899 2qjtA 352 34.88 2fb1A 226 37.05 a.4.5.68,d.113.1.6 133225,133226 1rgyA 360 37.65 e.3.1.1 97456 2i8tA 167 37.80 1jl2A 156 40.72 c.55.3.1 66822 1v8yA 170 41.04 d.113.1.1 113581 3bq9A 460 43.99 2ts1 419 44.39 2o9cA 342 44.41 1lfwA 470 44.92 c.56.5.4,d.58.19.1 77942,77943 2igiA 180 47.47 1bueA 265 47.95 e.3.1.1 42727 1fsyA 358 48.35 e.3.1.1 60016 2fvvA 194 48.60 d.113.1.1 134226 2a6tA 271 48.82 a.242.1.1,d.113.1.7 126309,126310 2hjhA 354 49.43 2drwA 363 50.11 e.3.1.1 131674 1ci9A 392 50.34 e.3.1.1 64767 1h75A 81 51.17 c.47.1.1 60716 1iv3A 152 51.72 d.79.5.1 76828 1vh7A 265 54.14 c.1.2.1 100646 2z0hA 197 55.52 1i2sA 282 57.25 e.3.1.1 71104 2guiA 194 58.71 c.55.3.5 135737 2ht9A 146 59.78 1jflA 228 60.03 c.78.2.1,c.78.2.1 71656,71657 1tzyD 103 61.43 a.22.1.1 107533 1t0aA 159 63.47 d.79.5.1 112192 2b06A 155 63.62 d.113.1.1 127624 1vhzA 198 66.22 d.113.1.1 100718 1potA 325 69.46 c.94.1.1 35807 2hb5A 164 69.78 2j7vA 298 70.21 1v82A 253 70.78 c.68.1.7 108415 1gx1A 160 70.83 d.79.5.1 70675 1vk9A 151 71.62 c.97.1.3 108640 1mp4A 292 73.10 c.68.1.6 79376 1ido 192 75.84 2a9fA 398 78.12 1eu1A 780 78.32 b.52.2.2,c.81.1.1 26903,35311 2dkoA 146 79.39 1oatA 439 79.90 c.67.1.4 34461 1jilA 420 80.75 c.26.1.1 66745 2fkbA 180 82.13 d.113.1.2 133650 2d0jA 246 83.24 2r14A 377 84.72 1j53A 186 85.62 c.55.3.5 77076 168lA 164 85.80 d.2.1.3 36975 2puzA 419 87.73 2pa7A 141 87.76 1kx5B 102 88.59 a.22.1.1 77594