# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2b3jA 159 6.27e-26 c.97.1.2 127787 2nx8A 179 9.15e-26 1z3aA 168 2.63e-25 c.97.1.2 124396 1wwrA 171 4.14e-25 c.97.1.2 121366 1wkqA 164 5.99e-25 c.97.1.2 109393 2g84A 197 1.19e-24 c.97.1.2 134766 1tiyA 164 5.29e-24 c.97.1.2 107012 2a8nA 144 3.62e-23 c.97.1.2 126408 1p6oA 161 3.02e-22 c.97.1.2 94185 2b3zA 373 4.30e-21 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 1.27e-20 c.97.1.2 114004 2hvwA 184 3.81e-20 2hxvA 360 8.88e-20 c.71.1.2,c.97.1.2 136859,136860 1ctt 294 5.83e-13 1cttA 294 6.29e-13 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 0.000416 2fr5A 146 0.001185 c.97.1.1 133965 1uwzA 136 0.003690 c.97.1.1 108081 1jtkA 136 0.007209 c.97.1.1 71862 2nytA 190 0.02471 1r5tA 142 0.02871 c.97.1.1 104812 2bl9A 238 0.1585 1zy7A 403 0.9695 1wn5A 130 1.211 c.97.1.1 121082 2qxfA 482 2.692 2z3hA 130 2.881 3cngA 189 3.723 1sdeA 347 4.277 e.3.1.1 112073 2z00A 426 4.579 2ffyA 358 5.338 e.3.1.1 133394 1zkjA 359 6.298 2pbtA 134 6.562 1l0gA 358 8.789 e.3.1.1 73400 1mzuA 129 11.59 d.110.3.1 79714 1v7zA 260 12.73 c.125.1.1 100488 1rgyA 360 12.97 e.3.1.1 97456 3pte 349 13.69 2pqvA 154 13.73 1ci9A 392 15.76 e.3.1.1 64767 1rgzA 363 16.39 e.3.1.1 97457 2ef7A 133 16.44 2qjtA 352 16.57 1fsyA 358 16.85 e.3.1.1 60016 1sc3A 178 17.43 c.17.1.1 105416 1uuqA 440 18.67 c.1.8.3 100015 1llaA 628 18.92 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1i2sA 282 19.58 e.3.1.1 71104 1jr8A 117 19.74 a.24.15.1 67115 2fb1A 226 20.79 a.4.5.68,d.113.1.6 133225,133226 2i8tA 167 20.93 2iw0A 254 21.07 c.6.2.3 137737 1yqsA 349 21.46 e.3.1.1 123899 1bueA 265 21.56 e.3.1.1 42727 1pwgA 349 22.09 e.3.1.1 104340 2dkoA 146 22.11 1eu1A 780 24.14 b.52.2.2,c.81.1.1 26903,35311 2id0A 644 26.06 1v8yA 170 26.18 d.113.1.1 113581 1k20A 310 26.40 c.107.1.1 68027 2o1cA 150 26.64 2o9cA 342 27.61 2hjhA 354 28.28 2ts1 419 28.97 2drwA 363 30.95 e.3.1.1 131674 1iv3A 152 31.64 d.79.5.1 76828 1mp4A 292 31.75 c.68.1.6 79376 2igiA 180 34.77 2hb5A 164 35.06 3bq9A 460 36.05 2r14A 377 36.08 1t0aA 159 36.47 d.79.5.1 112192 1gx1A 160 36.57 d.79.5.1 70675 2a6tA 271 36.59 a.242.1.1,d.113.1.7 126309,126310 1vh7A 265 36.66 c.1.2.1 100646 1bmqA 167 37.30 c.17.1.1 30998 2guiA 194 41.08 c.55.3.5 135737 2zogA 479 41.59 2j7vA 298 41.60 2pw9A 268 42.36 1jl2A 156 43.35 c.55.3.1 66822 1vhzA 198 43.91 d.113.1.1 100718 1k2eA 156 44.76 d.113.1.1 72010 2ov5A 261 45.11 1g6aA 271 47.21 e.3.1.1 42704 2i5eA 211 47.37 1thfD 253 47.77 c.1.2.1 28535 1lfwA 470 50.68 c.56.5.4,d.58.19.1 77942,77943 4blmA 265 51.58 e.3.1.1 42721 2b06A 155 53.25 d.113.1.1 127624 2cf7A 165 53.88 1jilA 420 55.85 c.26.1.1 66745 1qtnA 164 56.46 c.17.1.1 30999 1q77A 138 56.97 c.26.2.4 96023 1hzoA 271 58.57 e.3.1.1 71092 1jflA 228 59.05 c.78.2.1,c.78.2.1 71656,71657 1izcA 339 59.88 c.1.12.5 83838 3bqwA 351 63.88 1potA 325 65.14 c.94.1.1 35807 1j53A 186 66.26 c.55.3.5 77076 2yvdA 431 67.86 1pzsA 208 67.95 b.1.8.1 104397 1glcG 501 68.50 c.55.1.4,c.55.1.4 33519,33520 1pyoA 167 69.12 c.17.1.1 95370 1b2pA 119 71.47 b.78.1.1 27998 2ix0A 663 72.78 1v82A 253 72.83 c.68.1.7 108415 2eh6A 375 73.09 1ohvA 472 74.13 c.67.1.4 93031 1wyzA 242 74.82 c.90.1.1 121471 2c2uA 207 75.32 2ip1A 432 76.26 1i0lA 221 76.56 c.61.1.1 71096 1g5cA 170 80.84 c.53.2.1 60264 2dkfA 431 81.30 1h75A 81 81.62 c.47.1.1 60716 1tzyD 103 82.55 a.22.1.1 107533 2nn6B 249 83.72 2yrrA 353 84.53 1iysA 262 84.56 e.3.1.1 90723 1xbyA 216 84.84 c.1.2.3 121846 3cjmA 282 86.43 2yy8A 201 87.09 2fmlA 273 87.25 a.4.5.68,d.113.1.6 133778,133779 1gxrA 337 87.37 b.69.4.1 70722 2odsA 265 88.72