# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2b3jA 159 9.51e-26 c.97.1.2 127787 2nx8A 179 1.31e-25 1z3aA 168 2.87e-25 c.97.1.2 124396 1wwrA 171 7.83e-25 c.97.1.2 121366 1wkqA 164 1.12e-24 c.97.1.2 109393 2g84A 197 2.89e-24 c.97.1.2 134766 1tiyA 164 8.91e-24 c.97.1.2 107012 2a8nA 144 3.60e-23 c.97.1.2 126408 1p6oA 161 7.76e-22 c.97.1.2 94185 2b3zA 373 6.39e-21 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 9.42e-21 c.97.1.2 114004 2hvwA 184 3.92e-20 2hxvA 360 7.54e-20 c.71.1.2,c.97.1.2 136859,136860 1ctt 294 1.16e-12 1cttA 294 1.23e-12 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 0.000713 2fr5A 146 0.001953 c.97.1.1 133965 1uwzA 136 0.006519 c.97.1.1 108081 1jtkA 136 0.01311 c.97.1.1 71862 2nytA 190 0.02213 1r5tA 142 0.03484 c.97.1.1 104812 2bl9A 238 0.1516 1zy7A 403 0.8188 1wn5A 130 1.696 c.97.1.1 121082 3cngA 189 2.493 1sdeA 347 3.599 e.3.1.1 112073 2z3hA 130 4.702 2qxfA 482 4.769 2pbtA 134 4.871 2z00A 426 5.608 2pqvA 154 6.639 2ffyA 358 6.959 e.3.1.1 133394 2id0A 644 9.408 3pte 349 10.47 1zkjA 359 10.58 2qjtA 352 11.94 1l0gA 358 13.23 e.3.1.1 73400 1v7zA 260 13.82 c.125.1.1 100488 1uuqA 440 15.86 c.1.8.3 100015 1yqsA 349 15.98 e.3.1.1 123899 2ef7A 133 18.23 1eu1A 780 18.92 b.52.2.2,c.81.1.1 26903,35311 2hjhA 354 19.31 2i8tA 167 19.84 1rgyA 360 19.97 e.3.1.1 97456 1sc3A 178 20.99 c.17.1.1 105416 1bmqA 167 21.12 c.17.1.1 30998 2o1cA 150 21.16 1mzuA 129 21.72 d.110.3.1 79714 1pwgA 349 22.00 e.3.1.1 104340 1bueA 265 22.77 e.3.1.1 42727 1fsyA 358 22.97 e.3.1.1 60016 2hb5A 164 23.13 1jr8A 117 24.58 a.24.15.1 67115 2fb1A 226 25.52 a.4.5.68,d.113.1.6 133225,133226 1ci9A 392 25.56 e.3.1.1 64767 1rgzA 363 25.57 e.3.1.1 97457 2iw0A 254 26.20 c.6.2.3 137737 2dkoA 146 26.23 1i0lA 221 27.24 c.61.1.1 71096 2drwA 363 30.10 e.3.1.1 131674 2j7vA 298 30.44 1iv3A 152 31.76 d.79.5.1 76828 2ix0A 663 32.44 1mp4A 292 33.51 c.68.1.6 79376 2o9cA 342 35.60 1gx1A 160 35.74 d.79.5.1 70675 1vh7A 265 36.10 c.1.2.1 100646 1i2sA 282 36.47 e.3.1.1 71104 2r14A 377 38.15 1t0aA 159 38.54 d.79.5.1 112192 1vhzA 198 40.82 d.113.1.1 100718 2guiA 194 41.00 c.55.3.5 135737 2ts1 419 41.46 1thfD 253 42.07 c.1.2.1 28535 2i5eA 211 43.63 1v8yA 170 44.05 d.113.1.1 113581 2igiA 180 44.76 2fb5A 205 45.42 d.320.1.1 133235 1k20A 310 46.10 c.107.1.1 68027 2zogA 479 46.57 2i7vA 459 46.79 3bq9A 460 47.90 1izcA 339 48.15 c.1.12.5 83838 2ov5A 261 48.30 1tzyD 103 49.76 a.22.1.1 107533 1q77A 138 51.62 c.26.2.4 96023 2pw9A 268 52.71 1potA 325 55.02 c.94.1.1 35807 2b0vA 153 55.40 d.113.1.1 127650 1j53A 186 58.60 c.55.3.5 77076 1zczA 464 60.16 c.24.1.3,c.97.1.4 124923,124924 2yvdA 431 60.30 3bqwA 351 60.88 2a6tA 271 60.89 a.242.1.1,d.113.1.7 126309,126310 3bk2A 562 62.81 1hzoA 271 63.12 e.3.1.1 71092 2dkfA 431 63.39 1b2pA 119 64.85 b.78.1.1 27998 1jflA 228 64.86 c.78.2.1,c.78.2.1 71656,71657 1v82A 253 65.43 c.68.1.7 108415 1wyzA 242 66.20 c.90.1.1 121471 168lA 164 66.25 d.2.1.3 36975 2pa7A 141 66.28 1k2eA 156 68.64 d.113.1.1 72010 1h75A 81 68.98 c.47.1.1 60716 1pyoA 167 69.02 c.17.1.1 95370 2puzA 419 69.70 1jilA 420 71.27 c.26.1.1 66745 4blmA 265 71.42 e.3.1.1 42721 1lfwA 470 72.39 c.56.5.4,d.58.19.1 77942,77943 1ghsA 306 72.60 c.1.8.3 28840 2ch5A 347 72.60 c.55.1.5,c.55.1.5 130453,130454 2eh6A 375 73.63 2cf7A 165 73.73 1jl2A 156 74.37 c.55.3.1 66822 2b06A 155 74.89 d.113.1.1 127624 1xrtA 467 76.29 b.92.1.3,c.1.9.6 122258,122259 1llaA 628 76.95 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 2p90A 319 77.86 1ybqB 390 78.08 2fvvA 194 79.50 d.113.1.1 134226 2ar9A 278 79.96 1qtnA 164 81.09 c.17.1.1 30999 1bkb 136 81.15 1ttzA 87 82.17 c.47.1.1 107309 2cmdA 312 82.55 c.2.1.5,d.162.1.1 30135,42102 3biqA 467 82.88 1rh9A 373 84.94 c.1.8.3 118773 176lA 164 86.04 d.2.1.3 36942 2dcfA 392 88.02 2odsA 265 89.35 1pzsA 208 89.39 b.1.8.1 104397 2fmlA 273 89.94 a.4.5.68,d.113.1.6 133778,133779