# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 3.76e-23 2b3jA 159 4.82e-23 c.97.1.2 127787 1z3aA 168 1.44e-22 c.97.1.2 124396 1wwrA 171 1.67e-22 c.97.1.2 121366 1wkqA 164 1.32e-21 c.97.1.2 109393 1tiyA 164 7.91e-21 c.97.1.2 107012 2g84A 197 1.27e-20 c.97.1.2 134766 2a8nA 144 1.72e-20 c.97.1.2 126408 1p6oA 161 6.64e-19 c.97.1.2 94185 2b3zA 373 5.03e-18 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 5.21e-18 c.97.1.2 114004 2hvwA 184 6.98e-18 2hxvA 360 1.10e-16 c.71.1.2,c.97.1.2 136859,136860 1ctt 294 3.44e-10 1cttA 294 4.28e-10 c.97.1.1,c.97.1.1 36022,36023 2fr5A 146 0.000581 c.97.1.1 133965 1uwzA 136 0.001666 c.97.1.1 108081 3b8fA 142 0.002687 1r5tA 142 0.003596 c.97.1.1 104812 1jtkA 136 0.003840 c.97.1.1 71862 2nytA 190 0.1777 1wn5A 130 0.7029 c.97.1.1 121082 2z3hA 130 0.8890 1zy7A 403 0.9024 2ffyA 358 4.931 e.3.1.1 133394 1zkjA 359 5.072 1l0gA 358 5.413 e.3.1.1 73400 1rgyA 360 7.752 e.3.1.1 97456 3cngA 189 9.894 1fsyA 358 11.13 e.3.1.1 60016 1rgzA 363 11.56 e.3.1.1 97457 1sdeA 347 15.48 e.3.1.1 112073 1mp4A 292 16.18 c.68.1.6 79376 2ehgA 149 16.56 1ei5A 520 18.97 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2pqvA 154 19.98 2bl9A 238 20.13 2fb1A 226 20.85 a.4.5.68,d.113.1.6 133225,133226 1h5rA 293 21.64 c.68.1.6 65623 1wn1A 356 21.73 1ido 192 22.26 2pw9A 268 22.27 2pbtA 134 24.29 2fmlA 273 24.76 a.4.5.68,d.113.1.6 133778,133779 1t0aA 159 28.82 d.79.5.1 112192 2dg1A 333 29.57 b.68.6.1 131493 1lfaA 187 31.58 c.62.1.1 34122 3pte 349 32.03 1hxnA 219 33.56 b.66.1.1 27529 2qjtA 352 35.65 2a9fA 398 36.02 1tzjA 338 36.37 c.79.1.1 112868 1fxoA 293 37.10 c.68.1.6 34524 1puiA 210 38.82 c.37.1.8 88292 2hbvA 334 40.07 c.1.9.15 136320 2dvtA 327 40.08 c.1.9.15 131793 1q77A 138 40.15 c.26.2.4 96023 1pxzA 346 45.23 b.80.1.1 111643 1tf1A 198 45.53 d.110.2.2 106826 2dkoA 146 46.24 1kjqA 391 46.76 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1j0dA 341 50.08 c.79.1.1 83902 2blnA 305 54.98 b.46.1.1,c.65.1.1 128734,128735 2bx2L 517 55.64 1w07A 659 55.84 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 2j7vA 298 55.86 1fiuA 286 57.04 c.52.1.10 33317 1mqeA 207 58.06 d.113.1.1 91394 1v8yA 170 58.46 d.113.1.1 113581 1mjnA 179 59.08 c.62.1.1 79210 1mkmA 249 60.11 a.4.5.33,d.110.2.2 79242,79243 1pwgA 349 60.49 e.3.1.1 104340 1gx1A 160 61.69 d.79.5.1 70675 1zboA 210 62.23 b.122.1.10 124859 1ci9A 392 64.09 e.3.1.1 64767 1iv3A 152 65.62 d.79.5.1 76828 1jl2A 156 65.66 c.55.3.1 66822 1e4fT 419 65.99 c.55.1.1,c.55.1.1 33453,33454 1lvwA 295 67.60 c.68.1.6 84723 1vl6A 388 67.85 c.2.1.7,c.58.1.3 108724,108725 1wr2A 238 69.37 1yqsA 349 69.43 e.3.1.1 123899 1ejxC 567 70.00 b.92.1.1,c.1.9.2 83184,83185 2ddhA 661 70.98 a.29.3.2,a.29.3.2,e.6.1.2 131394,131395,131396 2i8tA 167 72.77 3tglA 269 75.90 c.69.1.17 34733 2hb5A 164 79.29 1ltqA 301 82.45 c.108.1.9,c.37.1.1 78208,78209 1jl1A 155 85.50 c.55.3.1 66821 2drwA 363 86.59 e.3.1.1 131674 1jr8A 117 89.54 a.24.15.1 67115 2o9cA 342 89.73 1omhA 293 89.81 d.89.1.5 93348