# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2b3jA 159 6.52e-22 c.97.1.2 127787 2nx8A 179 6.86e-22 1z3aA 168 1.79e-21 c.97.1.2 124396 1wwrA 171 3.97e-21 c.97.1.2 121366 1wkqA 164 2.50e-20 c.97.1.2 109393 2g84A 197 2.53e-20 c.97.1.2 134766 1tiyA 164 1.45e-19 c.97.1.2 107012 2a8nA 144 1.84e-19 c.97.1.2 126408 2b3zA 373 6.60e-18 c.71.1.2,c.97.1.2 127807,127808 1p6oA 161 7.32e-18 c.97.1.2 94185 1vq2A 193 2.33e-17 c.97.1.2 114004 2hvwA 184 4.59e-17 2hxvA 360 6.58e-17 c.71.1.2,c.97.1.2 136859,136860 1ctt 294 1.17e-09 1cttA 294 1.46e-09 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 0.000441 2fr5A 146 0.001243 c.97.1.1 133965 1r5tA 142 0.003522 c.97.1.1 104812 1uwzA 136 0.005867 c.97.1.1 108081 1jtkA 136 0.009069 c.97.1.1 71862 2nytA 190 0.2170 2z3hA 130 0.5528 1wn5A 130 0.5542 c.97.1.1 121082 1zy7A 403 0.6219 1rgyA 360 9.105 e.3.1.1 97456 1ido 192 10.13 3cngA 189 10.34 1tzjA 338 12.02 c.79.1.1 112868 1zkjA 359 13.07 1rgzA 363 14.41 e.3.1.1 97457 2hb5A 164 14.51 1fsyA 358 15.04 e.3.1.1 60016 2fmlA 273 15.83 a.4.5.68,d.113.1.6 133778,133779 2ffyA 358 15.99 e.3.1.1 133394 2r14A 377 19.41 1mf7A 194 19.89 c.62.1.1 84937 1j0dA 341 20.52 c.79.1.1 83902 2fb1A 226 20.66 a.4.5.68,d.113.1.6 133225,133226 2o9cA 342 21.48 2hbvA 334 21.95 c.1.9.15 136320 1n62A 166 22.74 a.56.1.1,d.15.4.2 80090,80091 1l0gA 358 24.65 e.3.1.1 73400 2qkbA 154 28.16 1v8yA 170 28.34 d.113.1.1 113581 2pbtA 134 28.67 2qjtA 352 29.69 1jflA 228 35.20 c.78.2.1,c.78.2.1 71656,71657 1mdl 359 35.37 2b06A 155 36.63 d.113.1.1 127624 1kjqA 391 36.97 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1mp4A 292 38.80 c.68.1.6 79376 1sdeA 347 39.10 e.3.1.1 112073 1f2dA 341 39.52 c.79.1.1 35298 2p0iA 456 40.97 2dvtA 327 42.85 c.1.9.15 131793 1rm6C 161 44.47 a.56.1.1,d.15.4.2 111876,111877 2z00A 426 45.38 3cu2A 237 45.61 1thfD 253 46.01 c.1.2.1 28535 2i8tA 167 46.51 2b1xA 470 47.22 b.33.1.2,d.129.3.3 127675,127676 1js8A 394 49.54 a.86.1.1,b.112.1.1 67219,67220 1wkvA 389 49.82 c.79.1.1 120989 1ci9A 392 51.22 e.3.1.1 64767 1o13A 136 52.92 c.55.5.1 80762 1g5cA 170 57.23 c.53.2.1 60264 1xbyA 216 58.09 c.1.2.3 121846 1yd9A 193 58.49 c.50.1.2 122976 1q77A 138 58.83 c.26.2.4 96023 2a6tA 271 61.34 a.242.1.1,d.113.1.7 126309,126310 2bl9A 238 62.87 3bdiA 207 63.89 1h5rA 293 64.24 c.68.1.6 65623 1g0cA 364 64.40 c.1.8.3 60165 1x84A 189 64.79 d.113.1.2 121795 2z0hA 197 66.06 2zogA 479 67.39 1zkcA 197 67.52 b.62.1.1 125182 1mjnA 179 68.11 c.62.1.1 79210 3bq9A 460 68.44 1viuA 203 68.65 d.113.1.1 100771 2uwxA 494 69.58 e.3.1.1 140002 2p02A 396 72.65 2i7vA 459 72.89 1ghsA 306 75.70 c.1.8.3 28840 1mqeA 207 76.36 d.113.1.1 91394 2pw9A 268 78.58 1f21A 155 79.59 c.55.3.1 33550 1k2eA 156 81.24 d.113.1.1 72010 2higA 487 81.58 1qc5A 192 85.36 c.62.1.1 34147 3pte 349 88.99 1lfaA 187 89.50 c.62.1.1 34122 1jl2A 156 89.76 c.55.3.1 66822