# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 3.31e-10 2b3jA 159 3.96e-10 c.97.1.2 127787 1z3aA 168 1.38e-09 c.97.1.2 124396 1wwrA 171 5.62e-09 c.97.1.2 121366 2g84A 197 5.03e-08 c.97.1.2 134766 2a8nA 144 5.89e-08 c.97.1.2 126408 1p6oA 161 1.98e-07 c.97.1.2 94185 2hxvA 360 2.02e-07 c.71.1.2,c.97.1.2 136859,136860 2b3zA 373 2.42e-07 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 3.25e-07 c.97.1.2 114004 1wkqA 164 8.57e-07 c.97.1.2 109393 1tiyA 164 1.32e-06 c.97.1.2 107012 2hvwA 184 2.21e-06 1r5tA 142 0.4911 c.97.1.1 104812 1cttA 294 0.9373 c.97.1.1,c.97.1.1 36022,36023 1ctt 294 1.174 1uwzA 136 1.279 c.97.1.1 108081 2fr5A 146 1.453 c.97.1.1 133965 1jtkA 136 1.529 c.97.1.1 71862 1n3yA 198 3.346 c.62.1.1 79976 2pw9A 268 4.200 1mdl 359 6.503 3b8fA 142 7.176 1vi2A 300 8.314 c.2.1.7,c.58.1.5 100726,100727 1mf7A 194 9.174 c.62.1.1 84937 1mdlA 359 9.753 c.1.11.2,d.54.1.1 29247,38891 2pceA 386 12.63 2pmqA 377 13.79 1rvkA 382 14.35 c.1.11.2,d.54.1.1 97928,97929 1atzA 189 14.51 c.62.1.1 34132 1ido 192 15.17 2z3hA 130 16.15 2p0iA 456 16.25 1vk9A 151 17.67 c.97.1.3 108640 2oz3A 404 21.72 1vyrA 364 22.09 c.1.4.1 108906 1fnsA 196 22.70 c.62.1.1 34136 2iueA 212 23.27 2fr1A 486 23.32 c.2.1.2,c.2.1.2 133961,133962 1hlgA 371 23.63 c.69.1.6 34656 2z3zA 706 23.74 1pt6A 213 25.23 c.62.1.1 95091 2abbA 364 25.33 c.1.4.1 126517 2i5qA 415 26.26 2gouA 365 26.50 1lfaA 187 26.58 c.62.1.1 34122 1wn5A 130 27.43 c.97.1.1 121082 1v7pC 200 28.07 c.62.1.1 108408 1lehA 364 28.44 c.2.1.7,c.58.1.1 30268,33916 1vypX 364 28.89 c.1.4.1 108905 2mnr 357 29.55 2uubK 129 30.15 c.55.4.1 139942 2d5lA 706 30.39 1gntA 553 30.60 e.26.1.1 70290 2oqhA 385 30.62 2ox4A 403 30.65 1z0wA 207 31.98 2nqlA 388 32.17 2oqyA 391 33.24 1zy7A 403 34.78 1ci9A 392 36.50 e.3.1.1 64767 1ct9A 553 37.57 c.26.2.1,d.153.1.1 31616,41834 2c81A 418 37.61 1vqoN 187 37.75 c.55.4.1 120375 2qdeA 397 38.76 1li4A 432 40.57 c.2.1.4,c.23.12.3 84616,84617 1tkkA 366 41.20 c.1.11.2,d.54.1.1 107089,107090 1d4fA 431 41.49 c.2.1.4,c.23.12.3 30110,31370 2ozlB 341 42.25 c.36.1.7,c.48.1.2 139447,139448 2z5lA 511 43.25 1fjgK 129 43.95 c.55.4.1 33733 1mjnA 179 44.98 c.62.1.1 79210 1dt9A 437 45.24 c.55.4.2,d.79.3.2,d.91.1.1 33738,39815,40257 1vheA 373 47.88 b.49.3.1,c.56.5.4 100669,100670 2qmqA 286 49.49 3b8xA 390 50.04 1xjo 284 51.13 2uxyA 341 51.57 2r14A 377 52.75 1qq9A 284 56.40 c.56.5.4 33841 2pozA 392 56.61 2qddA 378 58.88 1jj2M 186 60.03 c.55.4.1 63098 2oz8A 389 61.08 1uf5A 303 61.35 d.160.1.2 107808 2qgyA 391 62.08 1ijbA 202 64.76 c.62.1.1 71229 1mucA 373 67.25 c.1.11.2,d.54.1.1 29236,38880 1vjnA 220 67.70 d.157.1.4 100825 1x7dA 350 69.17 c.2.1.13 114927 1v8bA 479 70.03 c.2.1.4,c.23.12.3 113564,113565 1erzA 303 71.19 d.160.1.2 59498 1yloA 348 71.20 b.49.3.1,c.56.5.4 123659,123660 1gnlA 544 71.79 e.26.1.1 70287 1c1dA 355 72.48 c.2.1.7,c.58.1.1 30270,33918 3bcxA 437 73.20 1zs9A 261 73.75 c.108.1.22 125600 1qc5A 192 73.84 c.62.1.1 34147 1xwfA 431 74.14 c.2.1.4,c.23.12.3 122392,122393 3bi1A 709 74.90 1iz0A 302 75.16 b.35.1.2,c.2.1.1 83821,83822 1q0pA 223 75.20 c.62.1.1 95507 2vqeK 129 75.27 1qp8A 303 76.45 c.2.1.4,c.23.12.1 30092,31352 2au3A 407 78.20 2gmsA 390 78.53 1zczA 464 78.83 c.24.1.3,c.97.1.4 124923,124924 2pp3A 398 79.65 2hu5A 582 80.74 b.69.7.2,c.69.1.33 136763,136764 3ciwA 348 85.98 2dt5A 211 88.36 a.4.5.38,c.2.1.12 131708,131709 1tzzA 392 88.37 c.1.11.2,d.54.1.1 112896,112897 3bjsA 428 88.41 2nu8B 388 89.47 2dyuA 334 89.62 2rdxA 379 89.98