Best Alignments for TR454

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2uxuA	1.1065e-24	2uxuA/TR454-2uxuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2f07A	4.3635e-24	2f07A/TR454-2f07A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bhqA	5.8538e-24	3bhqA/TR454-3bhqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bcgA	6.5476e-24	3bcgA/TR454-3bcgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ibdA	9.0534e-24	2ibdA/TR454-2ibdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qvtA	9.1016e-24	1qvtA/TR454-1qvtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
2hyjA	1.7472e-23	2hyjA/TR454-2hyjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2genA	2.1461e-23	2genA/TR454-2genA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
3bruA	3.0962e-23	3bruA/TR454-3bruA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1jt6A	3.1043e-23	1jt6A/TR454-1jt6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
3c2bA	3.7426e-23	3c2bA/TR454-3c2bA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qcoA	4.0887e-23	2qcoA/TR454-2qcoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1rktA	4.9768e-23	1rktA/TR454-1rktA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
3crjA	5.1613e-23	3crjA/TR454-3crjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pbxA	7.2471e-23	2pbxA/TR454-2pbxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2g3bA	8.7884e-23	2g3bA/TR454-2g3bA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
2id6A	1.0288e-22	2id6A/TR454-2id6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3cdlA	1.1125e-22	3cdlA/TR454-3cdlA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zkgA	1.1641e-22	1zkgA/TR454-1zkgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
1vi0A	1.1684e-22	1vi0A/TR454-1vi0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001