Best Alignments for TR454

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2hyjA	1.3577e-28	2hyjA/TR454-2hyjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zkgA	2.7805e-27	1zkgA/TR454-1zkgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
2i10A	5.2507e-27	2i10A/TR454-2i10A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
3bruA	5.6862e-27	3bruA/TR454-3bruA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fx0A	6.2125e-27	2fx0A/TR454-2fx0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
2rasA	1.1740e-26	2rasA/TR454-2rasA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2g7sA	1.2685e-26	2g7sA/TR454-2g7sA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
2id6A	1.3025e-26	2id6A/TR454-2id6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2raeA	1.2226e-25	2raeA/TR454-2raeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2iekA	1.7432e-25	2iekA/TR454-2iekA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2iu5A	2.1447e-25	2iu5A/TR454-2iu5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2uxuA	2.6491e-25	2uxuA/TR454-2uxuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2f07A	4.7566e-25	2f07A/TR454-2f07A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3crjA	5.0780e-25	3crjA/TR454-3crjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pbxA	5.7921e-25	2pbxA/TR454-2pbxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2zb9A	5.9513e-25	2zb9A/TR454-2zb9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bhqA	6.0491e-25	3bhqA/TR454-3bhqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1rktA	6.1942e-25	1rktA/TR454-1rktA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
1vi0A	8.8347e-25	1vi0A/TR454-1vi0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
2of7A	8.8809e-25	2of7A/TR454-2of7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001