# List of top-scoring protein chains for TR454.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 5.67e-20 a.4.1.9,a.121.1.1 100720,100721 1pb6A 212 4.65e-19 a.4.1.9,a.121.1.1 88017,88018 3bcgA 215 6.42e-18 3bruA 222 1.28e-17 2uxuA 210 4.51e-17 3cdlA 203 1.07e-16 2ibdA 204 2.00e-16 2hytA 197 2.14e-16 2i10A 202 2.73e-16 a.4.1.9,a.121.1.1 136960,136961 2iaiA 230 4.72e-16 2iekA 200 7.67e-16 2id6A 202 7.69e-16 1zkgA 212 7.70e-16 a.4.1.9,a.121.1.1 125194,125195 2g7sA 194 9.40e-16 a.4.1.9,a.121.1.1 134737,134738 2genA 197 1.41e-15 a.4.1.9,a.121.1.1 135062,135063 2f07A 197 2.04e-15 2g3bA 208 2.54e-15 a.4.1.9,a.121.1.1 134558,134559 2eh3A 179 5.64e-15 3crjA 199 1.20e-14 3bhqA 211 1.20e-14 1rktA 205 1.23e-14 a.4.1.9,a.121.1.1 97623,97624 2gfnA 209 1.75e-14 a.4.1.9,a.121.1.1 135101,135102 1ui5A 215 2.27e-14 a.4.1.9,a.121.1.1 107856,107857 2pbxA 203 2.44e-14 2nx4A 194 2.89e-14 3c07A 273 3.47e-14 2fx0A 201 5.53e-14 a.4.1.9,a.121.1.1 134269,134270 2qibA 231 6.85e-14 1qvtA 194 7.04e-14 a.4.1.9,a.121.1.1 104602,104603 3ccyA 203 7.57e-14 1rkwA 194 9.53e-14 a.4.1.9,a.121.1.1 104967,104968 1jt6A 188 9.61e-14 a.4.1.9,a.121.1.1 67247,67248 2jj7A 186 1.49e-13 2zcmA 192 1.76e-13 1sgmA 191 1.78e-13 a.4.1.9,a.121.1.1 105537,105538 2d6yA 202 1.92e-13 a.4.1.9,a.121.1.1 131313,131314 2fbqA 235 1.96e-13 a.4.1.9,a.121.1.1 133256,133257 2qtqA 213 2.52e-13 2zcnA 192 3.24e-13 2q24A 194 4.72e-13 2qwtA 196 4.73e-13 2qcoA 210 5.81e-13 2hyjA 200 8.12e-13 2raeA 207 2.55e-12 2np3A 212 5.87e-12 a.4.1.9,a.121.1.1 138420,138421 1u9nA 236 6.27e-12 a.4.1.9,a.121.1.1 113246,113247 1t56A 216 6.30e-12 a.4.1.9,a.121.1.1 106428,106429 3cjdA 198 1.00e-11 2np5A 203 1.16e-11 a.4.1.9,a.121.1.1 138424,138425 2fq4A 192 1.48e-11 a.4.1.9,a.121.1.1 133937,133938 2of7A 260 1.65e-11 2pz9A 226 1.95e-11 2fd5A 180 3.73e-11 a.4.1.9,a.121.1.1 133291,133292 2rekA 199 4.91e-11 3b81A 203 5.01e-11 2guhA 214 6.06e-11 3c2bA 221 1.12e-10 2rasA 212 1.21e-10 2dg8A 193 1.30e-10 3bniA 229 2.26e-10 3bjbA 207 4.30e-10 2oerA 214 5.01e-10 3cwrA 208 7.47e-10 2id3A 225 1.01e-09 a.4.1.9,a.121.1.1 137261,137262 2zoyA 185 1.10e-09 2zozA 183 1.10e-09 2yveA 185 1.10e-09 2yvhA 177 1.11e-09 3colA 196 2.36e-09 1t33A 224 2.58e-09 a.4.1.9,a.121.1.1 106295,106296 2oi8A 216 2.66e-09 2zb9A 214 4.30e-09 2dg7A 195 8.03e-09 2hkuA 215 1.28e-08 1zk8A 183 1.38e-08 a.4.1.9,a.121.1.1 125177,125178 1qpiA 203 1.71e-08 a.4.1.9,a.121.1.1 16072,19249 2tctA 207 1.72e-08 a.4.1.9,a.121.1.1 16063,19240 2o7oA 207 1.72e-08 a.4.1.9,a.121.1.1 138930,138931 2vkeA 208 1.72e-08 2ns7A 208 1.76e-08 2trtA 217 1.79e-08 a.4.1.9,a.121.1.1 16064,19241 2hxiA 241 2.73e-08 3bqyA 209 3.00e-08 2vprA 207 6.52e-08 2qkoA 215 6.54e-08 1a6iA 217 1.03e-07 a.4.1.9,a.121.1.1 16066,19243 2hxoA 237 4.03e-07 2vkvA 208 4.21e-07 1z0xA 220 4.71e-07 a.4.1.9,a.121.1.1 124334,124335 2o7tA 199 5.82e-07 2g7lA 243 2.85e-06 a.4.1.9,a.121.1.1 134734,134735 2g7gA 213 2.78e-05 a.4.1.9,a.121.1.1 134732,134733 2optA 234 5.20e-05 2iu5A 195 0.000192 2e85A 159 1.081 2i8lA 156 1.097 2pg4A 95 4.466 1du6A 64 8.085 a.4.1.1 16002 1kftA 78 8.446 a.60.2.3 77375 1pufB 73 8.937 a.4.1.1 95132 1pruA 56 9.223 a.35.1.5 17104 1b72B 87 9.252 a.4.1.1 16001 2douA 376 10.07 1b8iB 63 12.70 a.4.1.1 16011 1pveA 72 15.92 a.189.1.1 104322 1lfuP 82 17.55 a.4.1.1 77939 1mhyD 521 17.60 a.25.1.2 16780 1uxcA 65 18.89 a.35.1.5 17119 1qruA 553 22.14 b.53.1.2,c.26.1.1 26946,31585 1nylA 539 22.72 b.53.1.2,c.26.1.1 80741,80742 1qtqA 553 23.20 b.53.1.2,c.26.1.1 26940,31579 1euyA 548 23.21 b.53.1.2,c.26.1.1 26945,31584 1o0cA 554 23.24 b.53.1.2,c.26.1.1 86529,86530 1qrtA 553 23.33 b.53.1.2,c.26.1.1 26943,31582 1qrsA 553 23.57 b.53.1.2,c.26.1.1 26941,31580 2rd2A 556 24.16 1s7oA 113 27.30 a.4.13.3 105354 1hlvA 131 30.00 a.4.1.7,a.4.1.7 65854,65855 3dbiA 338 30.53 2bjcA 62 38.06 a.35.1.5 128620 3ctpA 330 49.48 2o5hA 136 51.83 1htbA 374 54.76 b.35.1.2,c.2.1.1 24715,29731 3bj6A 152 54.79 1hdzA 374 54.97 b.35.1.2,c.2.1.1 24725,29741 1hdyA 374 55.02 b.35.1.2,c.2.1.1 24723,29739 1u3uA 374 55.21 b.35.1.2,c.2.1.1 113005,113006 2jn6A 97 57.76 2q15A 385 59.51 1lccA 51 59.86 a.35.1.5 17110 2q11A 388 59.92 2vijA 392 60.00 3b7hA 78 61.71 1gwcA 230 66.56 a.45.1.1,c.47.1.5 70660,70661 2fdpA 388 66.84 b.50.1.2 133316 3cibA 390 66.96 2g94A 389 67.02 b.50.1.2 134790 1fknA 391 67.14 b.50.1.2 26879 2qp8A 395 67.16 2iqgA 406 67.60 b.50.1.2 137588 1deqA 390 68.36 i.9.1.1 45987 3buhA 409 68.55 1ym2A 402 68.99 b.50.1.2 123679 2ohqA 402 69.20 b.50.1.2 139075 1sjyA 159 69.29 d.113.1.1 98900 1ym4A 408 69.39 b.50.1.2 123682 2zhvA 411 69.40 3ckpA 412 69.88 1w50A 411 69.92 b.50.1.2 109173 2ph8A 405 71.08 1zcjA 463 71.67 2qzlA 411 73.34 1lqcA 56 75.70 a.35.1.5 17109 2ekcA 262 81.88 1dk7A 146 87.42 c.8.5.1 30772