# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 1.86e-23 a.4.1.9,a.121.1.1 100720,100721 1rktA 205 9.93e-23 a.4.1.9,a.121.1.1 97623,97624 2pbxA 203 2.09e-22 2uxuA 210 2.95e-22 2id6A 202 3.66e-22 1zkgA 212 4.63e-22 a.4.1.9,a.121.1.1 125194,125195 3bruA 222 5.16e-22 2rasA 212 8.01e-22 3bcgA 215 8.12e-22 2g7sA 194 9.01e-22 a.4.1.9,a.121.1.1 134737,134738 2f07A 197 9.81e-22 2ibdA 204 1.15e-21 2i10A 202 1.19e-21 a.4.1.9,a.121.1.1 136960,136961 2hyjA 200 1.21e-21 1t56A 216 1.57e-21 a.4.1.9,a.121.1.1 106428,106429 2iekA 200 1.61e-21 3bhqA 211 1.71e-21 3crjA 199 1.90e-21 1z77A 200 2.08e-21 a.4.1.9,a.121.1.1 124588,124589 2genA 197 2.12e-21 a.4.1.9,a.121.1.1 135062,135063 3cwrA 208 2.64e-21 3ccyA 203 3.14e-21 1pb6A 212 3.79e-21 a.4.1.9,a.121.1.1 88017,88018 2fq4A 192 4.27e-21 a.4.1.9,a.121.1.1 133937,133938 2hytA 197 6.41e-21 1qvtA 194 8.79e-21 a.4.1.9,a.121.1.1 104602,104603 2dg7A 195 8.84e-21 2g3bA 208 9.36e-21 a.4.1.9,a.121.1.1 134558,134559 2iaiA 230 9.44e-21 2fx0A 201 1.31e-20 a.4.1.9,a.121.1.1 134269,134270 1jt6A 188 1.45e-20 a.4.1.9,a.121.1.1 67247,67248 2qtqA 213 1.47e-20 2nx4A 194 1.85e-20 2raeA 207 1.88e-20 2jj7A 186 2.01e-20 3cdlA 203 2.31e-20 2of7A 260 2.45e-20 2zb9A 214 2.98e-20 3b81A 203 3.72e-20 2qcoA 210 3.73e-20 1ui5A 215 4.59e-20 a.4.1.9,a.121.1.1 107856,107857 2o7tA 199 4.84e-20 2np5A 203 5.01e-20 a.4.1.9,a.121.1.1 138424,138425 3colA 196 1.57e-19 2o7oA 207 1.79e-19 a.4.1.9,a.121.1.1 138930,138931 3c2bA 221 2.20e-19 2q24A 194 2.31e-19 2eh3A 179 2.47e-19 2hkuA 215 2.56e-19 2iu5A 195 3.61e-19 3cjdA 198 4.23e-19 2qibA 231 4.49e-19 2dg8A 193 4.79e-19 2fbqA 235 6.14e-19 a.4.1.9,a.121.1.1 133256,133257 2yveA 185 7.38e-19 1sgmA 191 7.78e-19 a.4.1.9,a.121.1.1 105537,105538 3bqyA 209 1.13e-18 2vkeA 208 1.32e-18 2d6yA 202 1.87e-18 a.4.1.9,a.121.1.1 131313,131314 1v7bA 185 1.96e-18 a.4.1.9,a.121.1.1 119861,119862 2vprA 207 2.37e-18 2rekA 199 3.37e-18 1a6i 217 3.51e-18 2fd5A 180 5.03e-18 a.4.1.9,a.121.1.1 133291,133292 2guhA 214 6.75e-18 3bniA 229 7.03e-18 3bjbA 207 7.30e-18 2qwtA 196 8.02e-18 1t33A 224 1.10e-17 a.4.1.9,a.121.1.1 106295,106296 1zk8A 183 1.28e-17 a.4.1.9,a.121.1.1 125177,125178 2gfnA 209 1.52e-17 a.4.1.9,a.121.1.1 135101,135102 2oi8A 216 3.09e-17 2qkoA 215 4.65e-17 2zcmA 192 9.91e-17 1z0xA 220 2.01e-16 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 5.44e-16 2g7lA 243 1.17e-15 a.4.1.9,a.121.1.1 134734,134735 2tct 207 2.09e-15 2optA 234 3.22e-15 2hxoA 237 7.37e-15 2id3A 225 2.29e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 1.93e-11 a.4.1.9,a.121.1.1 134732,134733 2dt5A 211 1.038 a.4.5.38,c.2.1.12 131708,131709 2oxoA 103 1.062 2jn6A 97 1.610 3bbyA 215 1.730 2pjpA 121 1.927 1hlvA 131 1.960 a.4.1.7,a.4.1.7 65854,65855 2pg4A 95 2.078 1c0wA 225 2.263 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 6paxA 133 2.479 a.4.1.5,a.4.1.5 64758,64759 2ev0A 142 2.598 a.4.5.24,a.76.1.1 132413,132414 2bnmA 198 2.829 a.35.1.3,b.82.1.10 128835,128836 1xcbA 211 2.927 a.4.5.38,c.2.1.12 109552,109553 1a5t 334 3.060 1lccA 51 3.078 a.35.1.5 17110 1cjgA 62 6.005 a.35.1.5 17112 1on2A 142 6.119 a.4.5.24,a.76.1.1 87103,87104 2bjcA 62 6.319 a.35.1.5 128620 1pdnC 128 7.174 a.4.1.5 16047 2qq9A 226 7.522 1bi0 226 7.551 2hpkA 208 8.181 1gulA 222 8.393 a.45.1.1,c.47.1.5 17675,32969 1jkoC 52 8.859 a.4.1.2 66809 1s7oA 113 10.10 a.4.13.3 105354 1fseA 74 10.33 a.4.6.2 60000 3bzcA 785 10.85 3b7hA 78 11.14 3bs3A 76 11.28 1gwcA 230 11.86 a.45.1.1,c.47.1.5 70660,70661 1w07A 659 11.95 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1wsuA 124 12.21 a.4.5.35,a.4.5.35 121245,121246 1zljA 78 16.16 1oqyA 368 16.45 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1f3aA 222 17.44 a.45.1.1,c.47.1.5 17701,32995 2fbkA 181 17.87 a.4.5.28 133247 1hg5A 289 17.98 a.7.8.2,a.118.9.3 90360,90361 1b0nA 111 18.05 a.34.1.1,a.35.1.3 17001,17064 1gseA 221 18.23 a.45.1.1,c.47.1.5 17667,32961 1utxA 66 18.27 a.35.1.3 108034 1p4wA 99 19.27 a.4.6.2 87783 1je8A 82 19.65 a.4.6.2 77108 2ictA 94 19.68 1neqA 74 20.20 a.35.1.2 17063 2dtrA 226 20.52 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1vz0A 230 23.19 a.4.14.1,d.268.1.1 108929,108930 1u8bA 133 23.52 1wpkA 146 27.17 1fx7A 230 27.47 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2scpA 174 27.55 a.39.1.5 17256 2cro 71 29.99 1ho8A 480 30.02 a.118.1.9 61107 1jj2U 70 30.71 a.2.2.1 63106 2croA 71 32.92 a.35.1.2 17038 1vf1A 229 33.21 1vfsA 386 33.87 b.49.2.2,c.1.6.1 108584,108585 1ret 43 34.10 1tadA 324 34.51 a.66.1.1,c.37.1.8 18194,32077 2eiyA 308 34.70 1rzsA 61 34.87 a.35.1.2 105139 1xsvA 113 37.26 a.4.13.3 116003 1r69A 69 37.34 a.35.1.2 17028 1iqpA 327 40.62 a.80.1.1,c.37.1.20 62649,62650 1b1bA 140 40.89 a.4.5.24,a.76.1.1 16215,18421 1k3yA 221 41.09 a.45.1.1,c.47.1.5 77245,77246 1sedA 117 41.13 a.219.1.1 105449 3bct 457 41.52 1f5tA 121 41.55 a.4.5.24,a.76.1.1 16203,18409 1hcrA 52 41.69 a.4.1.2 16020 2gsqA 202 42.23 a.45.1.1,c.47.1.5 17715,33009 2ebyA 113 44.20 2auwA 170 44.74 a.35.1.10,d.331.1.1 127339,127340 1m0uA 249 44.98 a.45.1.1,c.47.1.5 78359,78360 1fr2A 86 45.79 a.28.2.1 83256 2r1jL 68 45.98 1yn9A 169 46.87 2z1dA 372 47.75 2a9dA 372 48.26 b.1.18.6,d.176.1.1 126431,126432 1iyhA 198 50.08 a.45.1.1,c.47.1.5 83790,83791 1y0uA 96 50.11 a.4.5.5 116310 1qpzA 340 52.21 a.35.1.5,c.93.1.1 17097,35673 1zr5A 214 52.28 c.50.1.2 125525 1adrA 76 52.35 a.35.1.2 17042 1a0eA 443 54.26 c.1.15.3 29537 2ivmA 150 54.34 1wdvA 152 54.82 d.116.1.1 114539 1bl0A 129 58.08 a.4.1.8,a.4.1.8 16053,16054 3cecA 104 59.02 2o3fA 111 59.29 1sfxA 109 59.40 a.4.5.50 105505 1y9qA 192 60.76 a.35.1.8,b.82.1.15 116592,116593 2ig3A 127 61.42 2blfA 373 61.84 2de3A 365 61.87 2bnxA 386 63.02 a.118.1.23 128861 2q0zX 339 64.22 2cdnA 201 64.29 c.37.1.1 130289 2aelA 374 65.65 1rp3A 239 66.75 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 2yxoA 267 67.54 1vpwA 340 68.12 a.35.1.5,c.93.1.1 17087,35680 1y7yA 74 68.83 a.35.1.3 122729 1resA 43 71.78 a.4.1.2 16023 2h27A 73 74.52 a.4.13.2 135993 1mc3A 296 75.46 c.68.1.6 78943 1k0dA 260 77.55 a.45.1.1,c.47.1.5 67930,67931 2dbbA 151 77.90 2zmvA 227 78.07 2cohA 202 78.37 a.4.5.4,b.82.3.2 130677,130678 1oyiA 82 79.25 a.4.5.19 93729 1tlqA 189 79.92 a.195.1.1 107134 2gauA 232 81.23 a.4.5.4,b.82.3.2 134894,134895 1es2A 262 81.66 e.3.1.1 42680 1r69 69 82.47 1g73A 162 82.58 a.7.4.1 16332 1r1uA 106 82.90 a.4.5.5 104771 1v2aA 210 83.21 a.45.1.1,c.47.1.5 100263,100264 2vd8A 391 83.38 2qsfX 171 83.54 2fjrA 189 83.91 2h09A 155 84.11 1gcvA 140 84.14 a.1.1.2 15410 1skf 262 84.79 3c8yA 574 86.11 1l7vA 326 86.14 f.22.1.1 73672 2b5aA 77 86.78 a.35.1.3 127882 1emvA 86 87.02 a.28.2.1 16944 2dtr 226 87.59 1oe8A 211 87.87 a.45.1.1,c.47.1.5 86905,86906 1fewA 184 88.19 a.7.4.1 16334 1oktA 211 89.02 a.45.1.1,c.47.1.5 93272,93273 3c6gA 479 89.03 1b48A 221 89.89 a.45.1.1,c.47.1.5 17703,32997