# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 6.33e-23 a.4.1.9,a.121.1.1 100720,100721 1rktA 205 3.30e-22 a.4.1.9,a.121.1.1 97623,97624 2pbxA 203 4.42e-22 1zkgA 212 7.10e-22 a.4.1.9,a.121.1.1 125194,125195 2uxuA 210 7.18e-22 2id6A 202 7.35e-22 3bruA 222 1.55e-21 3bcgA 215 1.76e-21 2g7sA 194 2.04e-21 a.4.1.9,a.121.1.1 134737,134738 2i10A 202 2.23e-21 a.4.1.9,a.121.1.1 136960,136961 2rasA 212 2.47e-21 2hyjA 200 2.68e-21 2f07A 197 2.84e-21 2ibdA 204 2.92e-21 2iekA 200 3.04e-21 3bhqA 211 3.17e-21 3crjA 199 3.72e-21 1z77A 200 4.07e-21 a.4.1.9,a.121.1.1 124588,124589 1t56A 216 4.59e-21 a.4.1.9,a.121.1.1 106428,106429 3cwrA 208 5.51e-21 2genA 197 6.55e-21 a.4.1.9,a.121.1.1 135062,135063 1pb6A 212 7.27e-21 a.4.1.9,a.121.1.1 88017,88018 3ccyA 203 8.72e-21 2fq4A 192 1.07e-20 a.4.1.9,a.121.1.1 133937,133938 3cjdA 198 1.60e-20 2hytA 197 1.67e-20 2dg7A 195 1.82e-20 1qvtA 194 1.91e-20 a.4.1.9,a.121.1.1 104602,104603 2iaiA 230 2.51e-20 2g3bA 208 2.65e-20 a.4.1.9,a.121.1.1 134558,134559 3cdlA 203 2.71e-20 2nx4A 194 2.71e-20 1jt6A 188 2.74e-20 a.4.1.9,a.121.1.1 67247,67248 2fx0A 201 3.27e-20 a.4.1.9,a.121.1.1 134269,134270 2of7A 260 4.37e-20 2raeA 207 5.78e-20 2qtqA 213 6.72e-20 2zb9A 214 7.02e-20 2qcoA 210 7.30e-20 2jj7A 186 8.53e-20 3b81A 203 9.43e-20 2np5A 203 1.18e-19 a.4.1.9,a.121.1.1 138424,138425 1ui5A 215 1.47e-19 a.4.1.9,a.121.1.1 107856,107857 2eh3A 179 2.17e-19 2o7tA 199 2.46e-19 2o7oA 207 2.64e-19 a.4.1.9,a.121.1.1 138930,138931 3c2bA 221 4.06e-19 3colA 196 4.46e-19 2hkuA 215 5.49e-19 2dg8A 193 6.29e-19 2q24A 194 6.53e-19 2iu5A 195 6.99e-19 2yveA 185 7.93e-19 1sgmA 191 8.15e-19 a.4.1.9,a.121.1.1 105537,105538 2fbqA 235 9.29e-19 a.4.1.9,a.121.1.1 133256,133257 2qibA 231 1.40e-18 3bqyA 209 1.55e-18 2vkeA 208 1.89e-18 1a6i 217 3.66e-18 1v7bA 185 3.74e-18 a.4.1.9,a.121.1.1 119861,119862 2vprA 207 3.95e-18 2d6yA 202 4.74e-18 a.4.1.9,a.121.1.1 131313,131314 2guhA 214 7.17e-18 2fd5A 180 7.98e-18 a.4.1.9,a.121.1.1 133291,133292 3bjbA 207 9.03e-18 1t33A 224 1.34e-17 a.4.1.9,a.121.1.1 106295,106296 3bniA 229 1.36e-17 2rekA 199 1.45e-17 1zk8A 183 1.63e-17 a.4.1.9,a.121.1.1 125177,125178 2qwtA 196 2.57e-17 2qkoA 215 3.49e-17 2gfnA 209 4.25e-17 a.4.1.9,a.121.1.1 135101,135102 2oi8A 216 6.09e-17 2zcmA 192 1.16e-16 1z0xA 220 3.76e-16 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 4.03e-16 2g7lA 243 1.40e-15 a.4.1.9,a.121.1.1 134734,134735 2tct 207 2.27e-15 2optA 234 7.28e-15 2hxoA 237 1.09e-14 2id3A 225 4.47e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 3.41e-11 a.4.1.9,a.121.1.1 134732,134733 2oxoA 103 1.504 2dt5A 211 1.904 a.4.5.38,c.2.1.12 131708,131709 1c0wA 225 2.326 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2jn6A 97 2.413 2ev0A 142 2.549 a.4.5.24,a.76.1.1 132413,132414 1pdnC 128 3.053 a.4.1.5 16047 2pg4A 95 3.077 1a5t 334 3.433 1xcbA 211 3.563 a.4.5.38,c.2.1.12 109552,109553 1w07A 659 4.233 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1hlvA 131 4.333 a.4.1.7,a.4.1.7 65854,65855 3bbyA 215 4.392 2pjpA 121 4.510 1ho8A 480 4.523 a.118.1.9 61107 2bnmA 198 4.574 a.35.1.3,b.82.1.10 128835,128836 1f3aA 222 5.108 a.45.1.1,c.47.1.5 17701,32995 6paxA 133 6.045 a.4.1.5,a.4.1.5 64758,64759 1lccA 51 6.441 a.35.1.5 17110 1on2A 142 7.071 a.4.5.24,a.76.1.1 87103,87104 3bzcA 785 7.336 1gwcA 230 8.080 a.45.1.1,c.47.1.5 70660,70661 2qq9A 226 9.565 1jkoC 52 9.628 a.4.1.2 66809 2bjcA 62 9.662 a.35.1.5 128620 1gseA 221 9.97 a.45.1.1,c.47.1.5 17667,32961 1gulA 222 10.56 a.45.1.1,c.47.1.5 17675,32969 1cjgA 62 11.02 a.35.1.5 17112 2hpkA 208 11.40 1tadA 324 11.68 a.66.1.1,c.37.1.8 18194,32077 1bi0 226 12.37 1oqyA 368 13.44 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1wsuA 124 14.54 a.4.5.35,a.4.5.35 121245,121246 2gsqA 202 16.43 a.45.1.1,c.47.1.5 17715,33009 1wpkA 146 16.67 1vf1A 229 16.82 1fseA 74 17.16 a.4.6.2 60000 1bl0A 129 18.96 a.4.1.8,a.4.1.8 16053,16054 1zljA 78 19.18 3b7hA 78 20.38 2fbkA 181 22.16 a.4.5.28 133247 1neqA 74 22.67 a.35.1.2 17063 3bs3A 76 22.80 1b1bA 140 23.11 a.4.5.24,a.76.1.1 16215,18421 1m0uA 249 23.15 a.45.1.1,c.47.1.5 78359,78360 1s7oA 113 24.16 a.4.13.3 105354 1je8A 82 24.53 a.4.6.2 77108 1p4wA 99 25.57 a.4.6.2 87783 1oe8A 211 27.00 a.45.1.1,c.47.1.5 86905,86906 2dtrA 226 27.21 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1hg5A 289 27.28 a.7.8.2,a.118.9.3 90360,90361 2blfA 373 28.66 1k3yA 221 28.90 a.45.1.1,c.47.1.5 77245,77246 1iqpA 327 29.82 a.80.1.1,c.37.1.20 62649,62650 1jj2U 70 30.00 a.2.2.1 63106 2ig3A 127 32.05 2scpA 174 34.19 a.39.1.5 17256 1yn9A 169 34.40 1k3kA 158 34.60 f.1.4.1 72017 1ret 43 34.87 1b48A 221 36.00 a.45.1.1,c.47.1.5 17703,32997 1u8bA 133 36.15 1fx7A 230 36.80 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1rzsA 61 36.83 a.35.1.2 105139 1oktA 211 37.30 a.45.1.1,c.47.1.5 93272,93273 1tlqA 189 38.68 a.195.1.1 107134 2cdnA 201 39.41 c.37.1.1 130289 3bct 457 39.70 1pgtA 210 41.22 a.45.1.1,c.47.1.5 17515,32809 2eiyA 308 41.26 1b0nA 111 41.49 a.34.1.1,a.35.1.3 17001,17064 1fr2A 86 42.33 a.28.2.1 83256 1iyhA 198 42.44 a.45.1.1,c.47.1.5 83790,83791 1vz0A 230 43.71 a.4.14.1,d.268.1.1 108929,108930 2aelA 374 44.94 1lea 84 44.95 1g73A 162 45.22 a.7.4.1 16332 2a9dA 372 45.59 b.1.18.6,d.176.1.1 126431,126432 2cro 71 45.67 1utxA 66 48.00 a.35.1.3 108034 1kxrA 339 48.84 d.3.1.3 73175 1oyiA 82 49.54 a.4.5.19 93729 1gcvA 140 50.47 a.1.1.2 15410 1pveA 72 51.43 a.189.1.1 104322 2croA 71 52.17 a.35.1.2 17038 2j3tD 219 54.91 2bkmA 128 55.78 2zmvA 227 56.50 1sedA 117 56.87 a.219.1.1 105449 1k0dA 260 60.23 a.45.1.1,c.47.1.5 67930,67931 2auwA 170 62.09 a.35.1.10,d.331.1.1 127339,127340 1r69A 69 63.94 a.35.1.2 17028 2q0zX 339 65.06 2ictA 94 66.32 1rp3A 239 66.42 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 2ivmA 150 67.04 1fewA 184 67.88 a.7.4.1 16334 2q7wA 396 68.26 1xsvA 113 68.62 a.4.13.3 116003 1nhyA 219 69.14 a.45.1.1,c.47.1.5 80520,80521 2on5A 206 72.01 1hcrA 52 73.76 a.4.1.2 16020 1vfsA 386 74.02 b.49.2.2,c.1.6.1 108584,108585 1f5tA 121 75.61 a.4.5.24,a.76.1.1 16203,18409 3cloA 258 75.63 3c6gA 479 77.49 1sfxA 109 79.21 a.4.5.50 105505 1wa5B 530 79.55 a.118.1.1 114432 1nfp 228 82.14 1y0uA 96 82.90 a.4.5.5 116310 1y9qA 192 83.49 a.35.1.8,b.82.1.15 116592,116593 1n2aA 201 83.62 a.45.1.1,c.47.1.5 91553,91554 3c7jA 237 83.89 1emvA 86 84.51 a.28.2.1 16944 1resA 43 88.29 a.4.1.2 16023 1ka2A 499 89.37 d.92.1.5 77305