# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 5.78e-21 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 1.68e-20 1rktA 205 3.23e-20 a.4.1.9,a.121.1.1 97623,97624 2i10A 202 4.07e-20 a.4.1.9,a.121.1.1 136960,136961 3bruA 222 4.09e-20 1zkgA 212 5.40e-20 a.4.1.9,a.121.1.1 125194,125195 2id6A 202 5.64e-20 2uxuA 210 6.29e-20 3bcgA 215 6.36e-20 2g7sA 194 6.94e-20 a.4.1.9,a.121.1.1 134737,134738 2ibdA 204 8.29e-20 2f07A 197 8.53e-20 2rasA 212 9.05e-20 2hyjA 200 1.35e-19 2genA 197 1.56e-19 a.4.1.9,a.121.1.1 135062,135063 2iekA 200 2.17e-19 1z77A 200 2.26e-19 a.4.1.9,a.121.1.1 124588,124589 3crjA 199 2.33e-19 1t56A 216 2.41e-19 a.4.1.9,a.121.1.1 106428,106429 1pb6A 212 2.60e-19 a.4.1.9,a.121.1.1 88017,88018 3bhqA 211 2.63e-19 3cwrA 208 4.28e-19 2g3bA 208 5.33e-19 a.4.1.9,a.121.1.1 134558,134559 2nx4A 194 5.47e-19 3ccyA 203 5.72e-19 2qtqA 213 5.77e-19 2iaiA 230 5.84e-19 2dg7A 195 6.23e-19 2fq4A 192 6.34e-19 a.4.1.9,a.121.1.1 133937,133938 2hytA 197 6.45e-19 1qvtA 194 7.94e-19 a.4.1.9,a.121.1.1 104602,104603 1jt6A 188 9.25e-19 a.4.1.9,a.121.1.1 67247,67248 2fx0A 201 9.49e-19 a.4.1.9,a.121.1.1 134269,134270 3cjdA 198 1.26e-18 2of7A 260 1.33e-18 2zb9A 214 1.42e-18 3cdlA 203 1.46e-18 3b81A 203 1.70e-18 2raeA 207 1.87e-18 2jj7A 186 2.13e-18 1ui5A 215 2.48e-18 a.4.1.9,a.121.1.1 107856,107857 2qcoA 210 5.87e-18 2np5A 203 6.70e-18 a.4.1.9,a.121.1.1 138424,138425 3colA 196 9.83e-18 2q24A 194 1.09e-17 2o7tA 199 1.22e-17 2hkuA 215 1.86e-17 3c2bA 221 2.18e-17 1sgmA 191 2.37e-17 a.4.1.9,a.121.1.1 105537,105538 2eh3A 179 2.73e-17 2fbqA 235 2.78e-17 a.4.1.9,a.121.1.1 133256,133257 2yveA 185 3.42e-17 2dg8A 193 3.99e-17 2o7oA 207 4.12e-17 a.4.1.9,a.121.1.1 138930,138931 2qibA 231 4.89e-17 2iu5A 195 5.07e-17 2d6yA 202 8.22e-17 a.4.1.9,a.121.1.1 131313,131314 3bqyA 209 1.05e-16 1a6i 217 1.64e-16 2fd5A 180 1.81e-16 a.4.1.9,a.121.1.1 133291,133292 2rekA 199 2.32e-16 2guhA 214 2.59e-16 2gfnA 209 2.70e-16 a.4.1.9,a.121.1.1 135101,135102 1t33A 224 2.76e-16 a.4.1.9,a.121.1.1 106295,106296 2vkeA 208 2.77e-16 2vprA 207 3.42e-16 2qwtA 196 3.79e-16 1v7bA 185 3.79e-16 a.4.1.9,a.121.1.1 119861,119862 3bniA 229 3.98e-16 3bjbA 207 4.92e-16 1zk8A 183 4.96e-16 a.4.1.9,a.121.1.1 125177,125178 2oi8A 216 2.15e-15 2qkoA 215 3.18e-15 2zcmA 192 3.27e-15 2oerA 214 9.48e-15 1z0xA 220 1.36e-14 a.4.1.9,a.121.1.1 124334,124335 2g7lA 243 5.16e-14 a.4.1.9,a.121.1.1 134734,134735 2tct 207 8.77e-14 2optA 234 1.15e-13 2hxoA 237 1.30e-13 2id3A 225 1.49e-13 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 1.08e-10 a.4.1.9,a.121.1.1 134732,134733 2dt5A 211 0.5378 a.4.5.38,c.2.1.12 131708,131709 2pg4A 95 0.8747 1xcbA 211 0.9756 a.4.5.38,c.2.1.12 109552,109553 1hlvA 131 1.234 a.4.1.7,a.4.1.7 65854,65855 2bnmA 198 1.509 a.35.1.3,b.82.1.10 128835,128836 2ev0A 142 1.697 a.4.5.24,a.76.1.1 132413,132414 2jn6A 97 1.729 2pjpA 121 1.768 6paxA 133 1.921 a.4.1.5,a.4.1.5 64758,64759 2oxoA 103 2.041 1lccA 51 2.227 a.35.1.5 17110 1pdnC 128 2.769 a.4.1.5 16047 1jkoC 52 2.914 a.4.1.2 66809 2hpkA 208 3.102 3b7hA 78 3.212 2bjcA 62 3.367 a.35.1.5 128620 1cjgA 62 3.494 a.35.1.5 17112 1c0wA 225 3.522 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1on2A 142 4.490 a.4.5.24,a.76.1.1 87103,87104 1w07A 659 4.790 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1fseA 74 5.005 a.4.6.2 60000 1neqA 74 5.402 a.35.1.2 17063 1zljA 78 5.415 3bs3A 76 5.763 3bbyA 215 6.100 1p4wA 99 6.150 a.4.6.2 87783 1wpkA 146 6.532 1wsuA 124 7.326 a.4.5.35,a.4.5.35 121245,121246 1je8A 82 7.576 a.4.6.2 77108 1bi0 226 7.988 1utxA 66 9.402 a.35.1.3 108034 2o3fA 111 9.431 1b0nA 111 9.443 a.34.1.1,a.35.1.3 17001,17064 1efaA 333 9.905 a.35.1.5,c.93.1.1 17106,35691 2qq9A 226 9.935 2cro 71 10.44 1s7oA 113 10.49 a.4.13.3 105354 2auwA 170 10.92 a.35.1.10,d.331.1.1 127339,127340 2croA 71 11.06 a.35.1.2 17038 1lea 84 11.47 1b1bA 140 11.58 a.4.5.24,a.76.1.1 16215,18421 1vz0A 230 12.28 a.4.14.1,d.268.1.1 108929,108930 3bzcA 785 12.55 1vf1A 229 13.89 1r69A 69 14.13 a.35.1.2 17028 1a5t 334 14.24 1f3aA 222 15.64 a.45.1.1,c.47.1.5 17701,32995 2ivmA 150 15.83 1y9qA 192 16.06 a.35.1.8,b.82.1.15 116592,116593 2r1jL 68 16.32 1u8bA 133 16.91 1adrA 76 17.41 a.35.1.2 17042 1ho8A 480 18.35 a.118.1.9 61107 2ictA 94 18.62 2blfA 373 19.07 2scpA 174 19.81 a.39.1.5 17256 1jftA 340 20.09 a.35.1.5,c.93.1.1 66652,66653 2a9dA 372 20.17 b.1.18.6,d.176.1.1 126431,126432 2ig3A 127 20.25 1y0uA 96 20.70 a.4.5.5 116310 1r69 69 21.49 1rzsA 61 21.75 a.35.1.2 105139 1gulA 222 21.86 a.45.1.1,c.47.1.5 17675,32969 2fjrA 189 22.41 2b5aA 77 22.95 a.35.1.3 127882 1tadA 324 23.84 a.66.1.1,c.37.1.8 18194,32077 1gwcA 230 24.08 a.45.1.1,c.47.1.5 70660,70661 1k3yA 221 24.68 a.45.1.1,c.47.1.5 77245,77246 3cloA 258 25.57 2dtrA 226 27.41 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2h09A 155 27.47 2ebyA 113 27.67 1ub9A 100 27.68 a.4.5.28 99159 1y7yA 74 27.72 a.35.1.3 122729 1zgwA 139 27.90 1fx7A 230 29.54 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1jj2U 70 29.60 a.2.2.1 63106 1sedA 117 30.22 a.219.1.1 105449 1ret 43 30.91 1k78A 149 32.11 a.4.1.5,a.4.1.5 68255,68256 3cecA 104 32.58 2cfxA 144 32.63 a.4.5.32,d.58.4.2 130395,130396 1sfxA 109 32.67 a.4.5.50 105505 1f5tA 121 32.98 a.4.5.24,a.76.1.1 16203,18409 1r1uA 106 33.22 a.4.5.5 104771 1wdvA 152 33.75 d.116.1.1 114539 2dbbA 151 34.64 1bl0A 129 35.71 a.4.1.8,a.4.1.8 16053,16054 2qz8A 149 38.12 1qpzA 340 38.44 a.35.1.5,c.93.1.1 17097,35673 1vpwA 340 39.14 a.35.1.5,c.93.1.1 17087,35680 1oyiA 82 39.29 a.4.5.19 93729 1topA 162 39.31 a.39.1.5 17223 2h27A 73 39.88 a.4.13.2 135993 1mxrA 375 39.96 a.25.1.2 85197 2vd8A 391 40.91 1oe8A 211 41.41 a.45.1.1,c.47.1.5 86905,86906 1gseA 221 42.88 a.45.1.1,c.47.1.5 17667,32961 2cg4A 152 43.48 a.4.5.32,d.58.4.2 130417,130418 1j5yA 187 43.83 a.4.5.1,d.94.2.1 71592,71593 1lliA 92 45.00 a.35.1.2 17025 2g7uA 257 45.03 2o0yA 260 45.74 1oqyA 368 45.79 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1tc3C 51 46.60 a.4.1.2 16025 1iqpA 327 46.90 a.80.1.1,c.37.1.20 62649,62650 3bct 457 47.51 1vfsA 386 47.65 b.49.2.2,c.1.6.1 108584,108585 2ia2A 265 47.77 1u2wA 122 49.52 a.4.5.5 119487 2eiyA 308 49.62 3co8A 380 50.27 1r1tA 122 51.05 a.4.5.5 104769 1smtA 122 51.06 a.4.5.5 16109 2e60A 101 51.60 1rp3A 239 52.36 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1es2A 262 53.07 e.3.1.1 42680 2e7xA 150 53.53 2biiA 424 53.77 3bwgA 239 54.32 1biaA 321 54.41 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1a2xA 159 54.60 a.39.1.5 17251 1l3lA 234 55.84 a.4.6.2,d.110.5.1 73541,73542 1gcvA 140 56.72 a.1.1.2 15410 2cdnA 201 57.28 c.37.1.1 130289 2gqqA 163 57.33 1oktA 211 57.38 a.45.1.1,c.47.1.5 93272,93273 2q7wA 396 59.41 1l7vA 326 61.19 f.22.1.1 73672 2cyyA 151 62.06 a.4.5.32,d.58.4.2 131028,131029 1u3eM 174 62.34 d.4.1.3,d.285.1.1 107640,107641 1es4A 262 62.81 e.3.1.1 42683 1anf 370 63.87 3c8yA 574 64.44 2q7eA 291 64.72 2pn6A 150 68.16 1xsvA 113 69.11 a.4.13.3 116003 2rn7A 108 70.40 1m1zA 513 70.67 c.26.2.1,d.153.1.1 78457,78458 1ka2A 499 74.20 d.92.1.5 77305 1resA 43 74.34 a.4.1.2 16023 1mkmA 249 75.56 a.4.5.33,d.110.2.2 79242,79243 1b48A 221 76.25 a.45.1.1,c.47.1.5 17703,32997 1hcrA 52 76.78 a.4.1.2 16020 1jhgA 101 76.96 a.4.12.1 19009 1xdyA 298 77.28 d.176.1.1 115186 2dtr 226 82.03 1mc3A 296 82.19 c.68.1.6 78943 2d0eA 407 84.41 1trrA 107 84.53 a.4.12.1 19017 2g0dA 409 84.79 1arsA 396 84.82 c.67.1.1 34287 2yxoA 267 84.82 2f6rA 281 85.23 1i1gA 141 85.29 a.4.5.32,d.58.4.2 65982,65983 1m0uA 249 86.78 a.45.1.1,c.47.1.5 78359,78360 1rx0A 393 87.01 a.29.3.1,e.6.1.1 98007,98008 2pexA 153 88.21 1k3kA 158 88.47 f.1.4.1 72017 1hqvA 191 89.02 a.39.1.8 61160