# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 3.74e-23 a.4.1.9,a.121.1.1 100720,100721 1rktA 205 2.38e-22 a.4.1.9,a.121.1.1 97623,97624 2pbxA 203 2.65e-22 1zkgA 212 4.19e-22 a.4.1.9,a.121.1.1 125194,125195 2id6A 202 5.14e-22 2uxuA 210 5.22e-22 2hyjA 200 1.03e-21 2rasA 212 1.50e-21 3bcgA 215 1.55e-21 2g7sA 194 1.57e-21 a.4.1.9,a.121.1.1 134737,134738 3bruA 222 1.62e-21 2f07A 197 1.88e-21 2ibdA 204 1.94e-21 3ccyA 203 2.16e-21 2i10A 202 2.45e-21 a.4.1.9,a.121.1.1 136960,136961 3bhqA 211 2.62e-21 2iekA 200 3.04e-21 3cwrA 208 3.42e-21 1z77A 200 3.72e-21 a.4.1.9,a.121.1.1 124588,124589 3crjA 199 3.91e-21 1t56A 216 4.13e-21 a.4.1.9,a.121.1.1 106428,106429 2g3bA 208 7.11e-21 a.4.1.9,a.121.1.1 134558,134559 2genA 197 7.42e-21 a.4.1.9,a.121.1.1 135062,135063 1qvtA 194 1.00e-20 a.4.1.9,a.121.1.1 104602,104603 1pb6A 212 1.10e-20 a.4.1.9,a.121.1.1 88017,88018 2dg7A 195 1.13e-20 2fq4A 192 1.23e-20 a.4.1.9,a.121.1.1 133937,133938 1jt6A 188 1.34e-20 a.4.1.9,a.121.1.1 67247,67248 2hytA 197 1.42e-20 2fx0A 201 1.44e-20 a.4.1.9,a.121.1.1 134269,134270 2nx4A 194 1.59e-20 2of7A 260 1.79e-20 2raeA 207 1.84e-20 2iaiA 230 1.96e-20 2qcoA 210 2.32e-20 3cdlA 203 2.43e-20 2zb9A 214 2.46e-20 2qtqA 213 2.59e-20 2jj7A 186 4.16e-20 3b81A 203 5.38e-20 2np5A 203 5.93e-20 a.4.1.9,a.121.1.1 138424,138425 1ui5A 215 7.36e-20 a.4.1.9,a.121.1.1 107856,107857 2o7tA 199 1.06e-19 2hkuA 215 2.26e-19 3c2bA 221 2.67e-19 3colA 196 3.16e-19 2eh3A 179 3.18e-19 2o7oA 207 3.84e-19 a.4.1.9,a.121.1.1 138930,138931 2iu5A 195 3.93e-19 2q24A 194 3.96e-19 3cjdA 198 4.24e-19 2dg8A 193 6.69e-19 2qibA 231 7.50e-19 2yveA 185 9.46e-19 1sgmA 191 1.02e-18 a.4.1.9,a.121.1.1 105537,105538 2fbqA 235 1.41e-18 a.4.1.9,a.121.1.1 133256,133257 3bqyA 209 2.04e-18 2vkeA 208 2.22e-18 1a6i 217 3.00e-18 1v7bA 185 3.53e-18 a.4.1.9,a.121.1.1 119861,119862 2vprA 207 4.15e-18 2d6yA 202 4.34e-18 a.4.1.9,a.121.1.1 131313,131314 2rekA 199 4.44e-18 3bniA 229 5.14e-18 2gfnA 209 7.19e-18 a.4.1.9,a.121.1.1 135101,135102 2guhA 214 7.46e-18 3bjbA 207 9.79e-18 2fd5A 180 1.39e-17 a.4.1.9,a.121.1.1 133291,133292 1t33A 224 1.49e-17 a.4.1.9,a.121.1.1 106295,106296 1zk8A 183 2.88e-17 a.4.1.9,a.121.1.1 125177,125178 2qkoA 215 2.95e-17 2qwtA 196 3.00e-17 2oi8A 216 4.86e-17 1z0xA 220 1.57e-16 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 2.95e-16 2zcmA 192 3.47e-16 2g7lA 243 1.73e-15 a.4.1.9,a.121.1.1 134734,134735 2tct 207 2.88e-15 2hxoA 237 5.55e-15 2optA 234 5.95e-15 2id3A 225 2.56e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 1.36e-11 a.4.1.9,a.121.1.1 134732,134733 2oxoA 103 0.7458 3bbyA 215 1.845 2ev0A 142 1.947 a.4.5.24,a.76.1.1 132413,132414 1c0wA 225 1.989 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2dt5A 211 2.707 a.4.5.38,c.2.1.12 131708,131709 1a5t 334 2.785 2pg4A 95 3.354 1lccA 51 4.120 a.35.1.5 17110 1gwcA 230 4.552 a.45.1.1,c.47.1.5 70660,70661 2jn6A 97 4.664 1hlvA 131 4.823 a.4.1.7,a.4.1.7 65854,65855 2bnmA 198 5.474 a.35.1.3,b.82.1.10 128835,128836 1on2A 142 6.357 a.4.5.24,a.76.1.1 87103,87104 2bjcA 62 6.570 a.35.1.5 128620 1gulA 222 7.298 a.45.1.1,c.47.1.5 17675,32969 1cjgA 62 7.921 a.35.1.5 17112 1xcbA 211 9.343 a.4.5.38,c.2.1.12 109552,109553 1bi0 226 10.08 3bzcA 785 10.22 6paxA 133 10.55 a.4.1.5,a.4.1.5 64758,64759 1wsuA 124 10.78 a.4.5.35,a.4.5.35 121245,121246 1tadA 324 11.29 a.66.1.1,c.37.1.8 18194,32077 1pdnC 128 11.62 a.4.1.5 16047 2qq9A 226 11.94 1fseA 74 13.41 a.4.6.2 60000 2pjpA 121 13.84 2gsqA 202 14.43 a.45.1.1,c.47.1.5 17715,33009 1f3aA 222 14.55 a.45.1.1,c.47.1.5 17701,32995 2hpkA 208 15.62 3b7hA 78 16.42 1iqpA 327 18.06 a.80.1.1,c.37.1.20 62649,62650 3bs3A 76 18.34 1w07A 659 19.76 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 2o3fA 111 20.14 1neqA 74 20.54 a.35.1.2 17063 1yn9A 169 20.79 1oqyA 368 21.49 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1gseA 221 21.71 a.45.1.1,c.47.1.5 17667,32961 1ho8A 480 21.86 a.118.1.9 61107 1jkoC 52 22.32 a.4.1.2 66809 1m0uA 249 22.82 a.45.1.1,c.47.1.5 78359,78360 2bkmA 128 23.60 1p4wA 99 25.05 a.4.6.2 87783 1zljA 78 26.09 1s7oA 113 27.14 a.4.13.3 105354 1alvA 173 28.84 a.39.1.8 17370 2ve3A 444 29.18 1zr5A 214 30.07 c.50.1.2 125525 1oe8A 211 30.15 a.45.1.1,c.47.1.5 86905,86906 1b1bA 140 31.66 a.4.5.24,a.76.1.1 16215,18421 1b0nA 111 31.96 a.34.1.1,a.35.1.3 17001,17064 2aelA 374 32.62 1utxA 66 33.60 a.35.1.3 108034 1v2aA 210 34.09 a.45.1.1,c.47.1.5 100263,100264 1ngkA 128 34.65 a.1.1.1 85673 2ictA 94 34.81 1r03A 182 34.99 a.25.1.1 104675 2scpA 174 35.59 a.39.1.5 17256 1l7vA 326 35.90 f.22.1.1 73672 2fbkA 181 36.19 a.4.5.28 133247 2b2hA 399 36.44 1hg5A 289 37.17 a.7.8.2,a.118.9.3 90360,90361 2h27A 73 38.35 a.4.13.2 135993 2vd8A 391 39.88 1mxrA 375 41.76 a.25.1.2 85197 2e60A 101 41.81 2a9dA 372 42.50 b.1.18.6,d.176.1.1 126431,126432 1aw9A 216 42.71 a.45.1.1,c.47.1.5 17736,33030 1nhyA 219 43.11 a.45.1.1,c.47.1.5 80520,80521 1vz0A 230 44.78 a.4.14.1,d.268.1.1 108929,108930 1k0dA 260 45.36 a.45.1.1,c.47.1.5 67930,67931 1pveA 72 46.21 a.189.1.1 104322 1fr2A 86 46.84 a.28.2.1 83256 2bnxA 386 47.29 a.118.1.23 128861 1h2eA 207 48.52 c.60.1.1 70857 2q88A 257 48.67 1gcvA 140 49.35 a.1.1.2 15410 1je8A 82 49.84 a.4.6.2 77108 2blfA 373 50.51 1rzsA 61 50.87 a.35.1.2 105139 1vfsA 386 52.33 b.49.2.2,c.1.6.1 108584,108585 1s69A 124 52.46 a.1.1.1 105305 2on5A 206 53.11 2oa6A 320 54.25 1ebbA 202 54.89 c.60.1.1 64900 2gauA 232 55.35 a.4.5.4,b.82.3.2 134894,134895 1tfeA 145 55.36 d.43.1.1 38680 1k3yA 221 56.72 a.45.1.1,c.47.1.5 77245,77246 2cro 71 58.00 1jj2U 70 58.35 a.2.2.1 63106 1bl0A 129 59.97 a.4.1.8,a.4.1.8 16053,16054 2auwA 170 61.97 a.35.1.10,d.331.1.1 127339,127340 1a0eA 443 62.94 c.1.15.3 29537 2olpA 152 63.13 1es4A 262 63.62 e.3.1.1 42683 3c8yA 574 64.03 1ret 43 64.92 1u8bA 133 65.57 2q7wA 396 66.32 1z2cB 383 66.35 a.118.1.23 124377 2croA 71 67.19 a.35.1.2 17038 3d0cA 314 67.83 1fx7A 230 68.35 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1nfp 228 68.56 1rp3A 239 70.01 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1r69A 69 70.94 a.35.1.2 17028 2z1dA 372 72.72 2cohA 202 73.48 a.4.5.4,b.82.3.2 130677,130678 1wdvA 152 73.70 d.116.1.1 114539 1wpkA 146 74.00 2dtrA 226 74.23 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qpzA 340 74.27 a.35.1.5,c.93.1.1 17097,35673 2h12A 436 74.95 1dlyA 164 76.11 a.1.1.1 14983 1f5tA 121 76.36 a.4.5.24,a.76.1.1 16203,18409 1ft9A 222 76.39 a.4.5.4,b.82.3.1 16107,28131 2yxoA 267 76.46 3c7jA 237 76.94 1xnfA 275 77.00 a.118.8.1 115580 1sedA 117 79.77 a.219.1.1 105449 1tr0A 108 80.77 d.58.4.4 107261 1emvA 86 81.71 a.28.2.1 16944 1k2xA 177 83.49 d.153.1.5 90929 1mvwB 145 84.86 i.15.1.1 79524 1vf1A 229 85.32 1zgwA 139 87.95 2fha 183 88.12 2fdvA 476 88.99 2fmyA 220 89.04 1j5yA 187 89.07 a.4.5.1,d.94.2.1 71592,71593