# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 1.35e-23 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 6.87e-23 1rktA 205 9.74e-23 a.4.1.9,a.121.1.1 97623,97624 1zkgA 212 1.32e-22 a.4.1.9,a.121.1.1 125194,125195 2id6A 202 1.77e-22 2uxuA 210 1.80e-22 2rasA 212 2.96e-22 2hyjA 200 3.05e-22 2f07A 197 4.50e-22 3bcgA 215 4.78e-22 3bruA 222 4.86e-22 2g7sA 194 5.83e-22 a.4.1.9,a.121.1.1 134737,134738 2ibdA 204 7.13e-22 2i10A 202 8.24e-22 a.4.1.9,a.121.1.1 136960,136961 3ccyA 203 8.36e-22 3bhqA 211 1.06e-21 2iekA 200 1.10e-21 1z77A 200 1.24e-21 a.4.1.9,a.121.1.1 124588,124589 3cwrA 208 1.33e-21 1t56A 216 1.44e-21 a.4.1.9,a.121.1.1 106428,106429 3crjA 199 1.55e-21 2g3bA 208 2.27e-21 a.4.1.9,a.121.1.1 134558,134559 2genA 197 2.52e-21 a.4.1.9,a.121.1.1 135062,135063 1pb6A 212 2.84e-21 a.4.1.9,a.121.1.1 88017,88018 1qvtA 194 3.49e-21 a.4.1.9,a.121.1.1 104602,104603 2dg7A 195 4.25e-21 2fq4A 192 4.51e-21 a.4.1.9,a.121.1.1 133937,133938 2fx0A 201 5.26e-21 a.4.1.9,a.121.1.1 134269,134270 1jt6A 188 5.26e-21 a.4.1.9,a.121.1.1 67247,67248 2raeA 207 5.64e-21 2of7A 260 6.16e-21 2nx4A 194 6.47e-21 2iaiA 230 6.71e-21 2hytA 197 7.19e-21 3cdlA 203 7.59e-21 2qcoA 210 1.01e-20 2zb9A 214 1.23e-20 2qtqA 213 1.36e-20 3b81A 203 1.74e-20 2jj7A 186 1.87e-20 2np5A 203 1.95e-20 a.4.1.9,a.121.1.1 138424,138425 1ui5A 215 2.00e-20 a.4.1.9,a.121.1.1 107856,107857 2o7tA 199 4.02e-20 2o7oA 207 8.50e-20 a.4.1.9,a.121.1.1 138930,138931 2eh3A 179 9.40e-20 2hkuA 215 9.80e-20 2dg8A 193 1.20e-19 3cjdA 198 1.31e-19 3c2bA 221 1.32e-19 3colA 196 1.38e-19 2q24A 194 1.55e-19 2iu5A 195 1.62e-19 2qibA 231 2.65e-19 1sgmA 191 3.45e-19 a.4.1.9,a.121.1.1 105537,105538 2yveA 185 3.73e-19 2fbqA 235 5.05e-19 a.4.1.9,a.121.1.1 133256,133257 3bqyA 209 5.16e-19 1a6i 217 6.94e-19 2vkeA 208 7.05e-19 3bniA 229 1.06e-18 2vprA 207 1.12e-18 1v7bA 185 1.54e-18 a.4.1.9,a.121.1.1 119861,119862 2d6yA 202 1.55e-18 a.4.1.9,a.121.1.1 131313,131314 2rekA 199 1.66e-18 2guhA 214 2.98e-18 2fd5A 180 3.49e-18 a.4.1.9,a.121.1.1 133291,133292 3bjbA 207 4.39e-18 2gfnA 209 5.73e-18 a.4.1.9,a.121.1.1 135101,135102 1t33A 224 6.49e-18 a.4.1.9,a.121.1.1 106295,106296 1zk8A 183 8.22e-18 a.4.1.9,a.121.1.1 125177,125178 2qkoA 215 8.94e-18 2qwtA 196 1.83e-17 2oi8A 216 2.15e-17 1z0xA 220 7.69e-17 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 1.33e-16 2zcmA 192 1.36e-16 2g7lA 243 8.32e-16 a.4.1.9,a.121.1.1 134734,134735 2tct 207 1.87e-15 2optA 234 2.34e-15 2hxoA 237 3.18e-15 2id3A 225 1.15e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 9.72e-12 a.4.1.9,a.121.1.1 134732,134733 2oxoA 103 0.4168 2ev0A 142 1.657 a.4.5.24,a.76.1.1 132413,132414 1a5t 334 2.215 1c0wA 225 2.255 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2dt5A 211 2.267 a.4.5.38,c.2.1.12 131708,131709 3bbyA 215 2.563 1gwcA 230 3.140 a.45.1.1,c.47.1.5 70660,70661 1lccA 51 4.102 a.35.1.5 17110 1hlvA 131 4.324 a.4.1.7,a.4.1.7 65854,65855 1on2A 142 4.538 a.4.5.24,a.76.1.1 87103,87104 2pg4A 95 4.647 2jn6A 97 4.794 1gulA 222 5.172 a.45.1.1,c.47.1.5 17675,32969 2bnmA 198 5.518 a.35.1.3,b.82.1.10 128835,128836 2bjcA 62 5.610 a.35.1.5 128620 6paxA 133 5.819 a.4.1.5,a.4.1.5 64758,64759 2pjpA 121 7.048 1cjgA 62 7.514 a.35.1.5 17112 1xcbA 211 7.766 a.4.5.38,c.2.1.12 109552,109553 1wsuA 124 8.897 a.4.5.35,a.4.5.35 121245,121246 3bzcA 785 9.262 1bi0 226 9.267 1pdnC 128 11.51 a.4.1.5 16047 1fseA 74 13.16 a.4.6.2 60000 1tadA 324 13.41 a.66.1.1,c.37.1.8 18194,32077 2qq9A 226 13.48 1f3aA 222 14.59 a.45.1.1,c.47.1.5 17701,32995 2hpkA 208 14.83 2gsqA 202 15.13 a.45.1.1,c.47.1.5 17715,33009 1yn9A 169 15.22 3b7hA 78 16.20 3bs3A 76 16.26 1ho8A 480 16.84 a.118.1.9 61107 1oqyA 368 19.72 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2aelA 374 20.02 2bkmA 128 20.23 1gseA 221 20.79 a.45.1.1,c.47.1.5 17667,32961 1iqpA 327 21.59 a.80.1.1,c.37.1.20 62649,62650 1w07A 659 22.27 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1m0uA 249 22.35 a.45.1.1,c.47.1.5 78359,78360 2o3fA 111 23.07 1neqA 74 24.37 a.35.1.2 17063 1alvA 173 25.95 a.39.1.8 17370 2ve3A 444 26.14 1jkoC 52 26.48 a.4.1.2 66809 1b0nA 111 26.65 a.34.1.1,a.35.1.3 17001,17064 1p4wA 99 26.78 a.4.6.2 87783 1s7oA 113 26.94 a.4.13.3 105354 1hg5A 289 27.65 a.7.8.2,a.118.9.3 90360,90361 1zr5A 214 27.79 c.50.1.2 125525 2ictA 94 28.00 1utxA 66 28.20 a.35.1.3 108034 2scpA 174 30.79 a.39.1.5 17256 1nfp 228 32.73 1zljA 78 33.20 1ngkA 128 34.58 a.1.1.1 85673 1v2aA 210 34.93 a.45.1.1,c.47.1.5 100263,100264 1l7vA 326 35.56 f.22.1.1 73672 1oe8A 211 35.66 a.45.1.1,c.47.1.5 86905,86906 2b2hA 399 35.67 1b1bA 140 36.53 a.4.5.24,a.76.1.1 16215,18421 2vd8A 391 39.20 1u8bA 133 39.76 1vz0A 230 42.49 a.4.14.1,d.268.1.1 108929,108930 2a9dA 372 43.79 b.1.18.6,d.176.1.1 126431,126432 2e60A 101 44.29 2blfA 373 45.29 1aw9A 216 47.07 a.45.1.1,c.47.1.5 17736,33030 1gcvA 140 47.42 a.1.1.2 15410 2auwA 170 47.77 a.35.1.10,d.331.1.1 127339,127340 2eiyA 308 48.03 1je8A 82 48.60 a.4.6.2 77108 2cro 71 50.40 1a0eA 443 50.53 c.1.15.3 29537 1qpzA 340 51.29 a.35.1.5,c.93.1.1 17097,35673 1r03A 182 51.40 a.25.1.1 104675 1ebbA 202 52.62 c.60.1.1 64900 2h27A 73 53.31 a.4.13.2 135993 1rzsA 61 53.56 a.35.1.2 105139 2z1dA 372 53.57 1k3yA 221 53.63 a.45.1.1,c.47.1.5 77245,77246 2fbkA 181 53.78 a.4.5.28 133247 1bl0A 129 54.96 a.4.1.8,a.4.1.8 16053,16054 1f5tA 121 55.37 a.4.5.24,a.76.1.1 16203,18409 2dtrA 226 55.62 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1h2eA 207 56.79 c.60.1.1 70857 1k0dA 260 57.35 a.45.1.1,c.47.1.5 67930,67931 1s69A 124 58.68 a.1.1.1 105305 2croA 71 58.77 a.35.1.2 17038 1zgwA 139 60.30 1vfsA 386 60.63 b.49.2.2,c.1.6.1 108584,108585 1fr2A 86 60.69 a.28.2.1 83256 2gauA 232 60.77 a.4.5.4,b.82.3.2 134894,134895 2bnxA 386 63.59 a.118.1.23 128861 1r69A 69 63.96 a.35.1.2 17028 1fx7A 230 64.93 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1wpkA 146 65.01 2q7wA 396 65.29 1nfpA 228 65.30 c.1.16.2 29555 1wdvA 152 65.43 d.116.1.1 114539 2q88A 257 65.44 1ft9A 222 68.76 a.4.5.4,b.82.3.1 16107,28131 1jj2U 70 69.57 a.2.2.1 63106 2on5A 206 70.49 1xnfA 275 71.17 a.118.8.1 115580 1tfeA 145 71.30 d.43.1.1 38680 1kxrA 339 71.48 d.3.1.3 73175 2ebyA 113 71.85 3bct 457 73.22 1cbyA 259 73.67 d.103.1.1 40705 2olpA 152 74.83 3d0cA 314 75.27 2cdnA 201 75.53 c.37.1.1 130289 1vf1A 229 76.15 1mxrA 375 76.62 a.25.1.2 85197 1pveA 72 78.21 a.189.1.1 104322 1dlyA 164 78.89 a.1.1.1 14983 2yxoA 267 79.31 1es4A 262 79.59 e.3.1.1 42683 3c7jA 237 80.54 1ret 43 80.83 1sedA 117 83.09 a.219.1.1 105449 2r1jL 68 86.44 2ho1A 252 88.94 2cohA 202 89.09 a.4.5.4,b.82.3.2 130677,130678