# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 2.28e-23 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 1.05e-22 1rktA 205 1.15e-22 a.4.1.9,a.121.1.1 97623,97624 1zkgA 212 2.05e-22 a.4.1.9,a.121.1.1 125194,125195 2id6A 202 2.91e-22 2uxuA 210 3.09e-22 2hyjA 200 7.21e-22 2rasA 212 8.94e-22 2f07A 197 9.41e-22 3bruA 222 9.76e-22 2g7sA 194 1.01e-21 a.4.1.9,a.121.1.1 134737,134738 3bcgA 215 1.07e-21 2ibdA 204 1.14e-21 2i10A 202 1.18e-21 a.4.1.9,a.121.1.1 136960,136961 3ccyA 203 1.34e-21 3bhqA 211 1.61e-21 2iekA 200 1.86e-21 3crjA 199 1.87e-21 1z77A 200 1.90e-21 a.4.1.9,a.121.1.1 124588,124589 1t56A 216 2.43e-21 a.4.1.9,a.121.1.1 106428,106429 3cwrA 208 3.08e-21 2genA 197 3.69e-21 a.4.1.9,a.121.1.1 135062,135063 1qvtA 194 3.78e-21 a.4.1.9,a.121.1.1 104602,104603 2g3bA 208 5.16e-21 a.4.1.9,a.121.1.1 134558,134559 1jt6A 188 5.72e-21 a.4.1.9,a.121.1.1 67247,67248 1pb6A 212 5.78e-21 a.4.1.9,a.121.1.1 88017,88018 2dg7A 195 7.37e-21 2fq4A 192 8.50e-21 a.4.1.9,a.121.1.1 133937,133938 2of7A 260 9.45e-21 2hytA 197 9.79e-21 2raeA 207 1.08e-20 2fx0A 201 1.19e-20 a.4.1.9,a.121.1.1 134269,134270 2nx4A 194 1.25e-20 2qcoA 210 1.26e-20 2zb9A 214 1.41e-20 2iaiA 230 1.45e-20 2qtqA 213 1.60e-20 3cdlA 203 2.41e-20 3b81A 203 3.27e-20 2np5A 203 3.52e-20 a.4.1.9,a.121.1.1 138424,138425 2jj7A 186 4.23e-20 1ui5A 215 5.28e-20 a.4.1.9,a.121.1.1 107856,107857 2o7tA 199 1.05e-19 2hkuA 215 1.74e-19 2o7oA 207 1.88e-19 a.4.1.9,a.121.1.1 138930,138931 2eh3A 179 2.09e-19 3cjdA 198 2.37e-19 3c2bA 221 2.39e-19 2iu5A 195 2.53e-19 3colA 196 2.74e-19 2dg8A 193 2.75e-19 2q24A 194 2.83e-19 1sgmA 191 3.94e-19 a.4.1.9,a.121.1.1 105537,105538 2yveA 185 4.58e-19 2qibA 231 4.65e-19 2fbqA 235 7.92e-19 a.4.1.9,a.121.1.1 133256,133257 2vkeA 208 1.08e-18 1a6i 217 1.35e-18 3bqyA 209 1.39e-18 1v7bA 185 1.87e-18 a.4.1.9,a.121.1.1 119861,119862 2vprA 207 1.93e-18 3bniA 229 2.21e-18 2rekA 199 2.44e-18 2d6yA 202 2.95e-18 a.4.1.9,a.121.1.1 131313,131314 2guhA 214 4.36e-18 2gfnA 209 5.35e-18 a.4.1.9,a.121.1.1 135101,135102 3bjbA 207 6.08e-18 2fd5A 180 6.67e-18 a.4.1.9,a.121.1.1 133291,133292 1t33A 224 7.07e-18 a.4.1.9,a.121.1.1 106295,106296 1zk8A 183 1.48e-17 a.4.1.9,a.121.1.1 125177,125178 2qwtA 196 1.70e-17 2qkoA 215 2.04e-17 2oi8A 216 3.59e-17 1z0xA 220 7.85e-17 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 1.81e-16 2zcmA 192 2.43e-16 2g7lA 243 1.63e-15 a.4.1.9,a.121.1.1 134734,134735 2tct 207 1.65e-15 2optA 234 4.43e-15 2hxoA 237 4.72e-15 2id3A 225 2.47e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 1.02e-11 a.4.1.9,a.121.1.1 134732,134733 2oxoA 103 0.6217 2ev0A 142 2.423 a.4.5.24,a.76.1.1 132413,132414 2dt5A 211 2.491 a.4.5.38,c.2.1.12 131708,131709 1a5t 334 2.580 3bbyA 215 2.669 2pg4A 95 2.700 1c0wA 225 3.179 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1gwcA 230 3.451 a.45.1.1,c.47.1.5 70660,70661 2jn6A 97 3.484 1lccA 51 3.585 a.35.1.5 17110 1hlvA 131 4.019 a.4.1.7,a.4.1.7 65854,65855 2bjcA 62 5.042 a.35.1.5 128620 1cjgA 62 5.513 a.35.1.5 17112 2bnmA 198 6.021 a.35.1.3,b.82.1.10 128835,128836 1gulA 222 6.307 a.45.1.1,c.47.1.5 17675,32969 1xcbA 211 6.892 a.4.5.38,c.2.1.12 109552,109553 6paxA 133 7.059 a.4.1.5,a.4.1.5 64758,64759 1on2A 142 7.074 a.4.5.24,a.76.1.1 87103,87104 1wsuA 124 8.693 a.4.5.35,a.4.5.35 121245,121246 2pjpA 121 9.418 1pdnC 128 11.34 a.4.1.5 16047 1fseA 74 11.54 a.4.6.2 60000 1bi0 226 12.21 3bzcA 785 13.57 2gsqA 202 13.97 a.45.1.1,c.47.1.5 17715,33009 1f3aA 222 15.34 a.45.1.1,c.47.1.5 17701,32995 2hpkA 208 15.43 1yn9A 169 15.69 1jkoC 52 15.88 a.4.1.2 66809 3b7hA 78 15.99 1tadA 324 16.12 a.66.1.1,c.37.1.8 18194,32077 2qq9A 226 17.20 3bs3A 76 17.63 2aelA 374 18.65 1neqA 74 19.04 a.35.1.2 17063 2ve3A 444 20.40 1oqyA 368 20.53 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1w07A 659 20.70 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1p4wA 99 20.94 a.4.6.2 87783 1gseA 221 21.42 a.45.1.1,c.47.1.5 17667,32961 1zr5A 214 21.45 c.50.1.2 125525 1s7oA 113 22.13 a.4.13.3 105354 1iqpA 327 22.39 a.80.1.1,c.37.1.20 62649,62650 1m0uA 249 22.99 a.45.1.1,c.47.1.5 78359,78360 2o3fA 111 24.43 1zljA 78 25.03 1ho8A 480 25.19 a.118.1.9 61107 2scpA 174 26.39 a.39.1.5 17256 1utxA 66 28.16 a.35.1.3 108034 2fbkA 181 28.57 a.4.5.28 133247 2ictA 94 28.75 2h27A 73 30.77 a.4.13.2 135993 1oe8A 211 31.21 a.45.1.1,c.47.1.5 86905,86906 1bl0A 129 31.70 a.4.1.8,a.4.1.8 16053,16054 1b0nA 111 31.91 a.34.1.1,a.35.1.3 17001,17064 1ngkA 128 32.00 a.1.1.1 85673 2vd8A 391 34.21 2bkmA 128 35.57 2b2hA 399 36.31 1nfp 228 36.44 1vz0A 230 36.66 a.4.14.1,d.268.1.1 108929,108930 2q7wA 396 37.15 1l7vA 326 37.22 f.22.1.1 73672 1v2aA 210 37.42 a.45.1.1,c.47.1.5 100263,100264 2blfA 373 37.81 1fr2A 86 37.88 a.28.2.1 83256 1je8A 82 38.42 a.4.6.2 77108 2auwA 170 39.02 a.35.1.10,d.331.1.1 127339,127340 1alvA 173 39.80 a.39.1.8 17370 1u8bA 133 41.19 1k3yA 221 43.04 a.45.1.1,c.47.1.5 77245,77246 2a9dA 372 44.50 b.1.18.6,d.176.1.1 126431,126432 1pveA 72 47.89 a.189.1.1 104322 1b1bA 140 48.52 a.4.5.24,a.76.1.1 16215,18421 1jj2U 70 48.54 a.2.2.1 63106 2e60A 101 48.70 1aw9A 216 48.80 a.45.1.1,c.47.1.5 17736,33030 2on5A 206 49.00 1rzsA 61 49.12 a.35.1.2 105139 1gcvA 140 49.54 a.1.1.2 15410 1vfsA 386 49.64 b.49.2.2,c.1.6.1 108584,108585 2cro 71 50.23 1a0eA 443 50.41 c.1.15.3 29537 2z1dA 372 51.19 1hg5A 289 51.70 a.7.8.2,a.118.9.3 90360,90361 2bnxA 386 52.03 a.118.1.23 128861 1ret 43 52.41 1wpkA 146 53.84 2olpA 152 54.21 1r69A 69 54.61 a.35.1.2 17028 1k0dA 260 54.82 a.45.1.1,c.47.1.5 67930,67931 2croA 71 56.74 a.35.1.2 17038 1zgwA 139 56.82 2gauA 232 57.60 a.4.5.4,b.82.3.2 134894,134895 2h12A 436 58.55 2q88A 257 60.14 1qpzA 340 60.73 a.35.1.5,c.93.1.1 17097,35673 2oa6A 320 62.02 1r03A 182 62.88 a.25.1.1 104675 1vf1A 229 64.11 1emvA 86 64.67 a.28.2.1 16944 1f5tA 121 65.26 a.4.5.24,a.76.1.1 16203,18409 2eiyA 308 65.69 1s69A 124 67.02 a.1.1.1 105305 1tfeA 145 67.83 d.43.1.1 38680 3c8yA 574 67.87 1oktA 211 68.03 a.45.1.1,c.47.1.5 93272,93273 1wdvA 152 68.38 d.116.1.1 114539 2ebyA 113 69.92 2r1jL 68 70.39 1kfiA 572 73.62 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 1k2xA 177 75.17 d.153.1.5 90929 1nfpA 228 76.60 c.1.16.2 29555 2awiA 317 77.84 a.35.1.11,a.118.8.4 127435,127436 1iyhA 198 77.90 a.45.1.1,c.47.1.5 83790,83791 3c7jA 237 77.97 1nhyA 219 78.87 a.45.1.1,c.47.1.5 80520,80521 3c6gA 479 79.42 2ivmA 150 79.62 1mxrA 375 79.68 a.25.1.2 85197 1ebbA 202 80.52 c.60.1.1 64900 1dlyA 164 80.86 a.1.1.1 14983 1oyiA 82 82.96 a.4.5.19 93729 1kxrA 339 83.34 d.3.1.3 73175 1i0aA 466 83.89 a.127.1.1 61479 1z2cB 383 84.06 a.118.1.23 124377 1es4A 262 85.23 e.3.1.1 42683 3co8A 380 86.01 1adrA 76 87.35 a.35.1.2 17042 1j5yA 187 88.80 a.4.5.1,d.94.2.1 71592,71593