# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 4.50e-22 a.4.1.9,a.121.1.1 100720,100721 2uxuA 210 1.08e-21 1rktA 205 1.53e-21 a.4.1.9,a.121.1.1 97623,97624 3bcgA 215 1.60e-21 2pbxA 203 1.78e-21 3bruA 222 2.24e-21 2f07A 197 2.33e-21 2i10A 202 5.53e-21 a.4.1.9,a.121.1.1 136960,136961 2g7sA 194 6.47e-21 a.4.1.9,a.121.1.1 134737,134738 2id6A 202 6.87e-21 2genA 197 6.97e-21 a.4.1.9,a.121.1.1 135062,135063 1t56A 216 7.47e-21 a.4.1.9,a.121.1.1 106428,106429 1pb6A 212 7.78e-21 a.4.1.9,a.121.1.1 88017,88018 1zkgA 212 8.91e-21 a.4.1.9,a.121.1.1 125194,125195 3bhqA 211 9.76e-21 2hytA 197 1.09e-20 2hyjA 200 1.34e-20 2rasA 212 1.43e-20 3crjA 199 1.57e-20 1z77A 200 1.67e-20 a.4.1.9,a.121.1.1 124588,124589 2ibdA 204 2.26e-20 2fq4A 192 3.30e-20 a.4.1.9,a.121.1.1 133937,133938 2g3bA 208 3.71e-20 a.4.1.9,a.121.1.1 134558,134559 2dg7A 195 4.32e-20 2iekA 200 4.73e-20 3ccyA 203 4.75e-20 2iaiA 230 5.65e-20 2qtqA 213 8.00e-20 2nx4A 194 8.06e-20 2fx0A 201 8.90e-20 a.4.1.9,a.121.1.1 134269,134270 3cdlA 203 9.65e-20 1qvtA 194 1.19e-19 a.4.1.9,a.121.1.1 104602,104603 3cjdA 198 1.23e-19 2jj7A 186 1.84e-19 2raeA 207 2.62e-19 3b81A 203 2.95e-19 2zb9A 214 3.02e-19 1jt6A 188 3.19e-19 a.4.1.9,a.121.1.1 67247,67248 2of7A 260 3.32e-19 3cwrA 208 3.48e-19 2np5A 203 6.18e-19 a.4.1.9,a.121.1.1 138424,138425 1ui5A 215 8.82e-19 a.4.1.9,a.121.1.1 107856,107857 2fbqA 235 1.52e-18 a.4.1.9,a.121.1.1 133256,133257 2qcoA 210 1.74e-18 2o7tA 199 2.16e-18 3c2bA 221 2.23e-18 2qibA 231 2.32e-18 2q24A 194 3.02e-18 3colA 196 3.46e-18 1sgmA 191 5.42e-18 a.4.1.9,a.121.1.1 105537,105538 2eh3A 179 9.59e-18 2d6yA 202 9.72e-18 a.4.1.9,a.121.1.1 131313,131314 1v7bA 185 1.71e-17 a.4.1.9,a.121.1.1 119861,119862 2yveA 185 2.18e-17 2rekA 199 2.74e-17 2fd5A 180 3.19e-17 a.4.1.9,a.121.1.1 133291,133292 2guhA 214 3.44e-17 2hkuA 215 3.54e-17 2dg8A 193 3.94e-17 2o7oA 207 5.17e-17 a.4.1.9,a.121.1.1 138930,138931 2qwtA 196 5.17e-17 1t33A 224 5.74e-17 a.4.1.9,a.121.1.1 106295,106296 3bjbA 207 7.38e-17 1zk8A 183 1.10e-16 a.4.1.9,a.121.1.1 125177,125178 1a6i 217 1.21e-16 2gfnA 209 1.39e-16 a.4.1.9,a.121.1.1 135101,135102 3bqyA 209 1.52e-16 2vkeA 208 2.88e-16 2vprA 207 3.21e-16 3bniA 229 3.58e-16 2zcmA 192 3.88e-16 2iu5A 195 7.68e-16 2oi8A 216 1.09e-15 1z0xA 220 1.95e-15 a.4.1.9,a.121.1.1 124334,124335 2qkoA 215 3.69e-15 2tct 207 1.58e-14 2g7lA 243 2.30e-14 a.4.1.9,a.121.1.1 134734,134735 2id3A 225 2.47e-14 a.4.1.9,a.121.1.1 137261,137262 2optA 234 2.50e-14 2oerA 214 5.10e-13 2hxoA 237 1.13e-12 2g7gA 213 8.12e-10 a.4.1.9,a.121.1.1 134732,134733 2oxoA 103 2.595 3bbyA 215 3.708 2gsqA 202 3.805 a.45.1.1,c.47.1.5 17715,33009 1gulA 222 6.314 a.45.1.1,c.47.1.5 17675,32969 1gseA 221 6.490 a.45.1.1,c.47.1.5 17667,32961 1gwcA 230 7.099 a.45.1.1,c.47.1.5 70660,70661 1k3yA 221 10.34 a.45.1.1,c.47.1.5 77245,77246 2pg4A 95 11.57 1vf1A 229 11.99 1qnrA 344 12.51 c.1.8.3 28834 1f3aA 222 12.86 a.45.1.1,c.47.1.5 17701,32995 2imiA 221 14.13 2on5A 206 14.40 6paxA 133 15.06 a.4.1.5,a.4.1.5 64758,64759 2bvyA 475 16.14 b.1.18.2,c.1.8.3 129301,129302 1glqA 209 16.23 a.45.1.1,c.47.1.5 17588,32882 1pdnC 128 16.94 a.4.1.5 16047 2dt5A 211 17.54 a.4.5.38,c.2.1.12 131708,131709 1fw1A 216 18.18 a.45.1.1,c.47.1.5 60051,60052 1hg5A 289 18.98 a.7.8.2,a.118.9.3 90360,90361 1m0uA 249 20.18 a.45.1.1,c.47.1.5 78359,78360 1b48A 221 20.19 a.45.1.1,c.47.1.5 17703,32997 1ho8A 480 21.12 a.118.1.9 61107 2ev0A 142 21.49 a.4.5.24,a.76.1.1 132413,132414 1iyhA 198 23.81 a.45.1.1,c.47.1.5 83790,83791 1on2A 142 24.96 a.4.5.24,a.76.1.1 87103,87104 1m12A 84 27.24 a.64.1.1 84745 2jn6A 97 29.50 1oe8A 211 32.70 a.45.1.1,c.47.1.5 86905,86906 1cbyA 259 34.12 d.103.1.1 40705 1cjgA 62 35.39 a.35.1.5 17112 1zcaA 359 36.98 a.66.1.1,c.37.1.8 124897,124898 1oqyA 368 37.19 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1pveA 72 40.16 a.189.1.1 104322 1v2aA 210 43.58 a.45.1.1,c.47.1.5 100263,100264 1a0eA 443 44.24 c.1.15.3 29537 2q0zX 339 47.32 1cmnA 402 48.37 a.104.1.1 18958 1b37B 472 48.58 c.3.1.2,d.16.1.5 30390,37954 1pgtA 210 49.01 a.45.1.1,c.47.1.5 17515,32809 3b7hA 78 49.37 2gsoA 393 50.06 1lccA 51 51.07 a.35.1.5 17110 2cz2A 223 54.71 2cohA 202 54.91 a.4.5.4,b.82.3.2 130677,130678 1hlvA 131 55.63 a.4.1.7,a.4.1.7 65854,65855 1rh9A 373 57.73 c.1.8.3 118773 1rzsA 61 58.84 a.35.1.2 105139 1wsuA 124 60.85 a.4.5.35,a.4.5.35 121245,121246 2bjcA 62 61.63 a.35.1.5 128620 1b0nA 111 61.90 a.34.1.1,a.35.1.3 17001,17064 2je8A 848 62.64 2zcwA 202 62.76 2ve3A 444 63.19 2yxoA 267 63.42 2osxA 481 63.84 2vpzA 765 64.67 3bs3A 76 64.84 1nstA 325 67.15 c.37.1.5 31951 1k8kA 418 68.62 c.55.1.1,c.55.1.1 68305,68306 1f2eA 201 68.89 a.45.1.1,c.47.1.5 17745,33039 1i6xA 209 69.41 a.4.5.4,b.82.3.2 83673,83674 1dm1A 146 73.69 a.1.1.2 15153 1xcbA 211 76.32 a.4.5.38,c.2.1.12 109552,109553 2napA 723 76.61 b.52.2.2,c.81.1.1 26926,35334 2bnmA 198 77.22 a.35.1.3,b.82.1.10 128835,128836 2zbxA 412 78.02 2scpA 174 79.54 a.39.1.5 17256 1ea2A 131 81.17 d.17.4.3 64860 1svsA 353 83.40 c.37.1.8 106051 1zrhA 274 84.80 1tadA 324 85.25 a.66.1.1,c.37.1.8 18194,32077 3cmgA 667 85.39 1fj2A 232 86.85 c.69.1.14 34720 2blfA 373 87.46