# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 1.21e-23 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 7.40e-23 1rktA 205 9.24e-23 a.4.1.9,a.121.1.1 97623,97624 2id6A 202 1.79e-22 1zkgA 212 2.48e-22 a.4.1.9,a.121.1.1 125194,125195 3bruA 222 2.63e-22 2rasA 212 2.84e-22 2i10A 202 3.91e-22 a.4.1.9,a.121.1.1 136960,136961 2f07A 197 3.94e-22 2uxuA 210 4.50e-22 2g7sA 194 5.24e-22 a.4.1.9,a.121.1.1 134737,134738 2ibdA 204 5.38e-22 2hyjA 200 5.49e-22 2iekA 200 5.81e-22 1pb6A 212 6.59e-22 a.4.1.9,a.121.1.1 88017,88018 1z77A 200 7.63e-22 a.4.1.9,a.121.1.1 124588,124589 3bcgA 215 8.91e-22 3crjA 199 9.19e-22 3bhqA 211 1.13e-21 3ccyA 203 1.24e-21 2hytA 197 1.41e-21 1t56A 216 1.55e-21 a.4.1.9,a.121.1.1 106428,106429 2genA 197 2.34e-21 a.4.1.9,a.121.1.1 135062,135063 1qvtA 194 2.46e-21 a.4.1.9,a.121.1.1 104602,104603 2dg7A 195 4.20e-21 2fq4A 192 4.26e-21 a.4.1.9,a.121.1.1 133937,133938 3cwrA 208 4.55e-21 1jt6A 188 4.91e-21 a.4.1.9,a.121.1.1 67247,67248 2fx0A 201 5.52e-21 a.4.1.9,a.121.1.1 134269,134270 2iaiA 230 6.34e-21 2jj7A 186 8.53e-21 2g3bA 208 9.68e-21 a.4.1.9,a.121.1.1 134558,134559 1ui5A 215 1.25e-20 a.4.1.9,a.121.1.1 107856,107857 2qtqA 213 1.36e-20 2nx4A 194 1.49e-20 3cdlA 203 1.49e-20 2raeA 207 1.63e-20 2of7A 260 2.44e-20 2qcoA 210 2.53e-20 3b81A 203 3.13e-20 2o7tA 199 3.41e-20 2np5A 203 4.60e-20 a.4.1.9,a.121.1.1 138424,138425 2zb9A 214 5.70e-20 2q24A 194 7.47e-20 3colA 196 8.52e-20 2o7oA 207 1.20e-19 a.4.1.9,a.121.1.1 138930,138931 2eh3A 179 1.28e-19 3cjdA 198 1.33e-19 3c2bA 221 1.44e-19 2fbqA 235 1.45e-19 a.4.1.9,a.121.1.1 133256,133257 2iu5A 195 1.61e-19 2dg8A 193 1.88e-19 2hkuA 215 2.23e-19 2yveA 185 3.62e-19 1sgmA 191 4.29e-19 a.4.1.9,a.121.1.1 105537,105538 2d6yA 202 5.43e-19 a.4.1.9,a.121.1.1 131313,131314 2qibA 231 5.67e-19 2fd5A 180 6.21e-19 a.4.1.9,a.121.1.1 133291,133292 3bqyA 209 1.28e-18 2vkeA 208 1.36e-18 3bniA 229 1.70e-18 3bjbA 207 2.15e-18 2rekA 199 2.21e-18 1a6i 217 2.42e-18 1v7bA 185 2.87e-18 a.4.1.9,a.121.1.1 119861,119862 2vprA 207 3.05e-18 2guhA 214 4.07e-18 2qkoA 215 4.86e-18 1t33A 224 5.92e-18 a.4.1.9,a.121.1.1 106295,106296 1zk8A 183 6.26e-18 a.4.1.9,a.121.1.1 125177,125178 2qwtA 196 1.50e-17 2oi8A 216 2.17e-17 2zcmA 192 2.17e-17 2gfnA 209 3.38e-17 a.4.1.9,a.121.1.1 135101,135102 1z0xA 220 1.23e-16 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 4.59e-16 2tct 207 1.22e-15 2optA 234 1.47e-15 2g7lA 243 1.48e-15 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 3.94e-15 2id3A 225 4.64e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 1.20e-11 a.4.1.9,a.121.1.1 134732,134733 2dt5A 211 1.248 a.4.5.38,c.2.1.12 131708,131709 6paxA 133 1.323 a.4.1.5,a.4.1.5 64758,64759 2jn6A 97 1.341 1hlvA 131 1.471 a.4.1.7,a.4.1.7 65854,65855 2oxoA 103 1.554 2pg4A 95 1.566 2pjpA 121 1.854 2bnmA 198 1.884 a.35.1.3,b.82.1.10 128835,128836 1c0wA 225 2.100 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2hpkA 208 2.181 2ev0A 142 2.520 a.4.5.24,a.76.1.1 132413,132414 1pdnC 128 2.763 a.4.1.5 16047 3bbyA 215 2.798 1xcbA 211 3.105 a.4.5.38,c.2.1.12 109552,109553 1lccA 51 3.282 a.35.1.5 17110 3b7hA 78 4.441 1cjgA 62 4.998 a.35.1.5 17112 2bjcA 62 5.257 a.35.1.5 128620 1s7oA 113 8.896 a.4.13.3 105354 1gwcA 230 8.963 a.45.1.1,c.47.1.5 70660,70661 3bs3A 76 9.437 1bi0 226 9.703 2o3fA 111 11.34 2qq9A 226 12.62 1gulA 222 12.93 a.45.1.1,c.47.1.5 17675,32969 1a5t 334 13.29 1utxA 66 14.01 a.35.1.3 108034 1fseA 74 14.94 a.4.6.2 60000 1on2A 142 15.38 a.4.5.24,a.76.1.1 87103,87104 1zr5A 214 17.66 c.50.1.2 125525 1jkoC 52 17.94 a.4.1.2 66809 2dtrA 226 18.02 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1jj2U 70 18.77 a.2.2.1 63106 2ictA 94 18.80 2blfA 373 19.37 1zljA 78 21.50 1wsuA 124 23.31 a.4.5.35,a.4.5.35 121245,121246 1b0nA 111 23.60 a.34.1.1,a.35.1.3 17001,17064 2auwA 170 24.45 a.35.1.10,d.331.1.1 127339,127340 1tadA 324 25.32 a.66.1.1,c.37.1.8 18194,32077 1je8A 82 25.69 a.4.6.2 77108 2zmvA 227 25.82 1u8bA 133 26.15 1r69A 69 27.17 a.35.1.2 17028 2ebyA 113 27.66 2croA 71 27.94 a.35.1.2 17038 3bzcA 785 28.56 2scpA 174 28.73 a.39.1.5 17256 2cro 71 28.98 1v2aA 210 29.00 a.45.1.1,c.47.1.5 100263,100264 1rzsA 61 29.29 a.35.1.2 105139 2a9dA 372 31.94 b.1.18.6,d.176.1.1 126431,126432 2aelA 374 33.28 1p4wA 99 33.33 a.4.6.2 87783 1neqA 74 34.15 a.35.1.2 17063 1y7yA 74 34.54 a.35.1.3 122729 2e60A 101 34.71 1f3aA 222 34.92 a.45.1.1,c.47.1.5 17701,32995 2h12A 436 36.78 1ret 43 38.58 1efaA 333 38.60 a.35.1.5,c.93.1.1 17106,35691 1k78A 149 39.89 a.4.1.5,a.4.1.5 68255,68256 1qpzA 340 40.18 a.35.1.5,c.93.1.1 17097,35673 1ho8A 480 41.37 a.118.1.9 61107 1wpkA 146 41.55 1f5tA 121 41.69 a.4.5.24,a.76.1.1 16203,18409 2b5aA 77 42.14 a.35.1.3 127882 1l7vA 326 43.44 f.22.1.1 73672 1oqyA 368 43.49 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1y9qA 192 45.48 a.35.1.8,b.82.1.15 116592,116593 1hg5A 289 45.63 a.7.8.2,a.118.9.3 90360,90361 1y0uA 96 45.65 a.4.5.5 116310 3bct 457 48.20 3cecA 104 48.41 1vz0A 230 50.15 a.4.14.1,d.268.1.1 108929,108930 1w07A 659 50.19 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1vf1A 229 50.69 1aw9A 216 50.95 a.45.1.1,c.47.1.5 17736,33030 1iqpA 327 51.08 a.80.1.1,c.37.1.20 62649,62650 2fbkA 181 51.40 a.4.5.28 133247 1k0dA 260 51.84 a.45.1.1,c.47.1.5 67930,67931 1jftA 340 51.96 a.35.1.5,c.93.1.1 66652,66653 1b1bA 140 52.42 a.4.5.24,a.76.1.1 16215,18421 2q7wA 396 55.37 3c8yA 574 56.29 1dlyA 164 57.27 a.1.1.1 14983 2q7eA 291 57.40 1a0eA 443 57.56 c.1.15.3 29537 1r69 69 58.09 2r1jL 68 58.25 1bl0A 129 59.00 a.4.1.8,a.4.1.8 16053,16054 1sedA 117 60.89 a.219.1.1 105449 3cbuA 214 61.71 2vd8A 391 61.73 1wdvA 152 63.35 d.116.1.1 114539 1k3yA 221 64.01 a.45.1.1,c.47.1.5 77245,77246 2z1dA 372 64.08 2j3tD 219 64.09 2f6rA 281 64.43 2f4mB 61 65.35 a.189.1.1 132931 1fw1A 216 65.48 a.45.1.1,c.47.1.5 60051,60052 2h09A 155 66.44 1fx7A 230 67.68 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1sfxA 109 68.54 a.4.5.50 105505 1anf 370 68.95 1s69A 124 69.39 a.1.1.1 105305 2biiA 424 70.24 1lea 84 70.28 2on5A 206 70.58 2ivmA 150 70.68 1vpwA 340 72.06 a.35.1.5,c.93.1.1 17087,35680 2qz8A 149 76.80 2de3A 365 77.57 1m0uA 249 80.11 a.45.1.1,c.47.1.5 78359,78360 1mmoB 384 80.39 a.25.1.2 16768 1tfeA 145 80.89 d.43.1.1 38680 1r1uA 106 81.33 a.4.5.5 104771 1es4A 262 81.33 e.3.1.1 42683 1alvA 173 83.79 a.39.1.8 17370 1g2hA 61 83.81 a.4.1.12 60224 1adrA 76 85.21 a.35.1.2 17042 1vfsA 386 86.09 b.49.2.2,c.1.6.1 108584,108585 2yxoA 267 86.35 2dbbA 151 86.45 1gseA 221 87.60 a.45.1.1,c.47.1.5 17667,32961 2fjrA 189 88.05 1vlgA 176 89.46 a.25.1.1 108816 1tqmA 282 89.49 a.4.5.56,d.144.1.9 107236,107237 1lhpA 312 89.68 c.72.1.5 77960