# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 1.66e-22 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 2.41e-22 1rktA 205 7.09e-22 a.4.1.9,a.121.1.1 97623,97624 2g7sA 194 1.85e-21 a.4.1.9,a.121.1.1 134737,134738 2id6A 202 1.94e-21 1zkgA 212 2.59e-21 a.4.1.9,a.121.1.1 125194,125195 1pb6A 212 2.90e-21 a.4.1.9,a.121.1.1 88017,88018 3bruA 222 3.30e-21 2rasA 212 3.46e-21 3bcgA 215 3.54e-21 2i10A 202 4.02e-21 a.4.1.9,a.121.1.1 136960,136961 2ibdA 204 4.65e-21 2uxuA 210 4.92e-21 2hyjA 200 5.57e-21 2iekA 200 5.84e-21 2f07A 197 6.32e-21 3crjA 199 6.85e-21 1t56A 216 7.11e-21 a.4.1.9,a.121.1.1 106428,106429 2genA 197 7.21e-21 a.4.1.9,a.121.1.1 135062,135063 1z77A 200 8.97e-21 a.4.1.9,a.121.1.1 124588,124589 3ccyA 203 9.41e-21 3bhqA 211 9.85e-21 2hytA 197 1.39e-20 2g3bA 208 2.53e-20 a.4.1.9,a.121.1.1 134558,134559 1qvtA 194 2.93e-20 a.4.1.9,a.121.1.1 104602,104603 2fq4A 192 3.67e-20 a.4.1.9,a.121.1.1 133937,133938 3cwrA 208 4.03e-20 2dg7A 195 4.89e-20 1jt6A 188 5.36e-20 a.4.1.9,a.121.1.1 67247,67248 2qtqA 213 5.73e-20 2jj7A 186 6.25e-20 2fx0A 201 6.96e-20 a.4.1.9,a.121.1.1 134269,134270 2iaiA 230 7.49e-20 3cdlA 203 9.32e-20 2qcoA 210 9.73e-20 2nx4A 194 1.39e-19 2raeA 207 1.49e-19 1ui5A 215 1.55e-19 a.4.1.9,a.121.1.1 107856,107857 2of7A 260 1.59e-19 2o7tA 199 1.78e-19 3b81A 203 2.75e-19 2o7oA 207 3.02e-19 a.4.1.9,a.121.1.1 138930,138931 2np5A 203 3.48e-19 a.4.1.9,a.121.1.1 138424,138425 2zb9A 214 4.24e-19 2hkuA 215 6.63e-19 2fbqA 235 7.24e-19 a.4.1.9,a.121.1.1 133256,133257 3c2bA 221 7.93e-19 2q24A 194 8.02e-19 2eh3A 179 8.19e-19 3colA 196 1.20e-18 3cjdA 198 1.42e-18 2dg8A 193 1.67e-18 2iu5A 195 1.86e-18 3bqyA 209 2.17e-18 2yveA 185 2.91e-18 1sgmA 191 3.16e-18 a.4.1.9,a.121.1.1 105537,105538 2qibA 231 3.75e-18 2fd5A 180 5.68e-18 a.4.1.9,a.121.1.1 133291,133292 2d6yA 202 7.14e-18 a.4.1.9,a.121.1.1 131313,131314 2vprA 207 9.26e-18 2vkeA 208 9.42e-18 3bjbA 207 1.47e-17 1a6i 217 1.56e-17 1v7bA 185 1.60e-17 a.4.1.9,a.121.1.1 119861,119862 3bniA 229 1.74e-17 2rekA 199 1.91e-17 2qwtA 196 2.76e-17 2guhA 214 3.93e-17 1t33A 224 4.24e-17 a.4.1.9,a.121.1.1 106295,106296 2qkoA 215 4.88e-17 1zk8A 183 7.51e-17 a.4.1.9,a.121.1.1 125177,125178 2zcmA 192 1.30e-16 2gfnA 209 1.74e-16 a.4.1.9,a.121.1.1 135101,135102 2oi8A 216 3.32e-16 1z0xA 220 6.86e-16 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 2.36e-15 2tct 207 7.87e-15 2g7lA 243 1.17e-14 a.4.1.9,a.121.1.1 134734,134735 2optA 234 1.35e-14 2id3A 225 2.27e-14 a.4.1.9,a.121.1.1 137261,137262 2hxoA 237 3.55e-14 2g7gA 213 8.79e-11 a.4.1.9,a.121.1.1 134732,134733 2oxoA 103 1.641 1a5t 334 2.474 1hlvA 131 2.680 a.4.1.7,a.4.1.7 65854,65855 2dt5A 211 2.950 a.4.5.38,c.2.1.12 131708,131709 1hqvA 191 3.088 a.39.1.8 61160 2jn6A 97 3.381 1c0wA 225 3.761 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2ev0A 142 3.888 a.4.5.24,a.76.1.1 132413,132414 2pg4A 95 4.038 1lccA 51 4.436 a.35.1.5 17110 2bnmA 198 4.484 a.35.1.3,b.82.1.10 128835,128836 2pjpA 121 4.957 2bnxA 386 4.973 a.118.1.23 128861 1gwcA 230 6.923 a.45.1.1,c.47.1.5 70660,70661 1el4A 195 8.509 a.39.1.5 59453 1gulA 222 8.822 a.45.1.1,c.47.1.5 17675,32969 1cjgA 62 9.206 a.35.1.5 17112 3b7hA 78 9.358 2bjcA 62 9.708 a.35.1.5 128620 3bbyA 215 10.01 2qq9A 226 11.05 1d0cA 444 12.39 d.174.1.1 64769 1zy9A 564 12.49 b.30.5.11,c.1.8.13 125813,125814 1bi0 226 13.74 2z1dA 372 15.73 1hr6A 475 15.93 d.185.1.1,d.185.1.1 61164,61165 1alvA 173 16.80 a.39.1.8 17370 1on2A 142 17.27 a.4.5.24,a.76.1.1 87103,87104 1jlwA 219 18.98 a.45.1.1,c.47.1.5 71741,71742 1jj2U 70 19.98 a.2.2.1 63106 3bs3A 76 21.22 1ho8A 480 22.03 a.118.1.9 61107 1q06A 135 22.89 a.6.1.3 95493 2yr1A 257 23.36 2o3fA 111 23.61 1s7oA 113 23.91 a.4.13.3 105354 1cezA 883 25.07 e.8.1.3 43110 1wsuA 124 25.48 a.4.5.35,a.4.5.35 121245,121246 1fseA 74 25.65 a.4.6.2 60000 1hg5A 289 26.55 a.7.8.2,a.118.9.3 90360,90361 1jkoC 52 27.08 a.4.1.2 66809 1f3aA 222 27.27 a.45.1.1,c.47.1.5 17701,32995 1u8bA 133 27.41 1m0uA 249 28.03 a.45.1.1,c.47.1.5 78359,78360 2oixA 186 28.48 6paxA 133 31.09 a.4.1.5,a.4.1.5 64758,64759 2aelA 374 31.38 2ez6A 221 32.04 a.149.1.1,d.50.1.1 132616,132617 2h09A 155 32.11 1utxA 66 32.91 a.35.1.3 108034 3c0iA 351 35.15 2b0mA 393 35.55 c.1.4.1 127644 2dg6A 222 35.81 3bzcA 785 35.84 1zljA 78 35.92 1ygeA 839 36.16 a.119.1.1,b.12.1.1 19234,23634 2ictA 94 36.33 2dtrA 226 37.08 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1es4A 262 37.10 e.3.1.1 42683 1w07A 659 38.03 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1c4zA 358 38.13 d.148.1.1 41766 1k3yA 221 38.42 a.45.1.1,c.47.1.5 77245,77246 2gv5A 161 39.00 1qpzA 340 40.17 a.35.1.5,c.93.1.1 17097,35673 1skf 262 40.70 1sedA 117 41.36 a.219.1.1 105449 1b0nA 111 41.38 a.34.1.1,a.35.1.3 17001,17064 2yv5A 302 41.74 2pexA 153 42.60 2bkmA 128 44.33 2on5A 206 44.39 1zarA 282 45.17 a.4.5.56,d.144.1.9 124843,124844 2scpA 174 45.32 a.39.1.5 17256 2auwA 170 46.00 a.35.1.10,d.331.1.1 127339,127340 1l2uA 245 46.82 c.1.2.3 73516 1x2gA 337 48.14 1nstA 325 48.63 c.37.1.5 31951 1tadA 324 50.20 a.66.1.1,c.37.1.8 18194,32077 1v2aA 210 50.80 a.45.1.1,c.47.1.5 100263,100264 2yy7A 312 51.95 1f5tA 121 53.17 a.4.5.24,a.76.1.1 16203,18409 3bct 457 53.57 1jeqA 609 53.80 a.140.2.1,b.131.1.1,c.62.1.3 64748,90366,90367 2cro 71 54.03 1mmoB 384 54.22 a.25.1.2 16768 1o12A 376 54.46 b.92.1.5,c.1.9.10 80758,80759 2croA 71 54.57 a.35.1.2 17038 1neqA 74 54.80 a.35.1.2 17063 1ngkA 128 55.82 a.1.1.1 85673 1r69A 69 56.08 a.35.1.2 17028 1ed8A 449 56.46 c.76.1.1 34988 2b81A 323 56.87 3bkhA 268 57.25 2hoeA 380 57.55 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1vh0A 161 57.87 c.116.1.3 100626 1l7vA 326 57.88 f.22.1.1 73672 1kfuS 184 58.15 a.39.1.8 68574 1rzsA 61 58.19 a.35.1.2 105139 2q09A 416 58.62 1vlgA 176 58.65 a.25.1.1 108816 1y0uA 96 59.12 a.4.5.5 116310 3boqA 160 59.50 1vf1A 229 60.11 2g64A 140 60.42 d.96.1.2 134694 2c5uA 375 60.95 1vz0A 230 61.11 a.4.14.1,d.268.1.1 108929,108930 1jeqB 565 61.30 b.131.1.2,c.62.1.4 90368,90369 1dlyA 164 62.16 a.1.1.1 14983 1je8A 82 62.35 a.4.6.2 77108 1sjiA 350 66.52 1jbkA 195 67.31 c.37.1.20 71631 1riiA 265 69.50 c.60.1.1 111807 1pveA 72 69.67 a.189.1.1 104322 2fbkA 181 69.74 a.4.5.28 133247 1anf 370 70.19 2b5aA 77 70.73 a.35.1.3 127882 2ebyA 113 70.88 1wpkA 146 71.04 1d2rA 326 72.82 c.26.1.1 31572 1ret 43 73.60 1lea 84 73.86 1z91A 147 74.56 a.4.5.28 124736 1xsvA 113 75.15 a.4.13.3 116003 1y7yA 74 75.47 a.35.1.3 122729 2e60A 101 76.77 1k0dA 260 77.58 a.45.1.1,c.47.1.5 67930,67931 1oqyA 368 77.60 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1fx7A 230 77.67 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1sfxA 109 77.75 a.4.5.50 105505 2zmvA 227 78.37 1p4wA 99 78.55 a.4.6.2 87783 2oa6A 320 79.39 2f4mB 61 79.64 a.189.1.1 132931 2boqA 331 82.68 2p8bA 369 83.64 1rp3A 239 83.64 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 3c6gA 479 85.34 1rypB 250 86.00 d.153.1.4 41933 1ytvA 366 86.19 c.94.1.1 124016 2j3tD 219 86.68 2dpiA 420 86.77 d.240.1.1,e.8.1.7 131612,131613 1zr5A 214 87.09 c.50.1.2 125525 1ceoA 343 87.76 c.1.8.3 28808 3cecA 104 87.94 1mvwC 147 88.76 i.15.1.1 79525