# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 3.52e-24 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 2.27e-23 1rktA 205 2.58e-23 a.4.1.9,a.121.1.1 97623,97624 2id6A 202 4.84e-23 1zkgA 212 6.69e-23 a.4.1.9,a.121.1.1 125194,125195 3bruA 222 9.74e-23 2i10A 202 9.85e-23 a.4.1.9,a.121.1.1 136960,136961 2rasA 212 1.16e-22 2uxuA 210 1.38e-22 2iekA 200 1.44e-22 2g7sA 194 1.46e-22 a.4.1.9,a.121.1.1 134737,134738 2ibdA 204 1.63e-22 2f07A 197 1.81e-22 2hyjA 200 2.17e-22 1z77A 200 2.20e-22 a.4.1.9,a.121.1.1 124588,124589 3crjA 199 2.91e-22 3bcgA 215 2.97e-22 1pb6A 212 3.09e-22 a.4.1.9,a.121.1.1 88017,88018 3ccyA 203 3.20e-22 3bhqA 211 3.48e-22 2hytA 197 4.68e-22 1t56A 216 5.77e-22 a.4.1.9,a.121.1.1 106428,106429 1qvtA 194 7.28e-22 a.4.1.9,a.121.1.1 104602,104603 2genA 197 7.38e-22 a.4.1.9,a.121.1.1 135062,135063 2fq4A 192 1.18e-21 a.4.1.9,a.121.1.1 133937,133938 2dg7A 195 1.32e-21 1jt6A 188 1.68e-21 a.4.1.9,a.121.1.1 67247,67248 2fx0A 201 2.07e-21 a.4.1.9,a.121.1.1 134269,134270 3cwrA 208 2.08e-21 2jj7A 186 2.28e-21 2iaiA 230 2.53e-21 2g3bA 208 2.55e-21 a.4.1.9,a.121.1.1 134558,134559 2qtqA 213 4.40e-21 2nx4A 194 4.52e-21 2raeA 207 4.71e-21 2of7A 260 5.37e-21 1ui5A 215 5.56e-21 a.4.1.9,a.121.1.1 107856,107857 3cdlA 203 7.52e-21 2qcoA 210 8.58e-21 2o7tA 199 1.22e-20 3b81A 203 1.26e-20 2np5A 203 1.33e-20 a.4.1.9,a.121.1.1 138424,138425 2zb9A 214 1.64e-20 2q24A 194 2.92e-20 2eh3A 179 3.42e-20 3colA 196 3.88e-20 2o7oA 207 4.32e-20 a.4.1.9,a.121.1.1 138930,138931 3cjdA 198 4.46e-20 2fbqA 235 5.89e-20 a.4.1.9,a.121.1.1 133256,133257 3c2bA 221 6.03e-20 2dg8A 193 7.14e-20 2hkuA 215 7.64e-20 2iu5A 195 8.50e-20 2yveA 185 9.40e-20 1sgmA 191 1.16e-19 a.4.1.9,a.121.1.1 105537,105538 2fd5A 180 2.43e-19 a.4.1.9,a.121.1.1 133291,133292 2qibA 231 2.64e-19 2d6yA 202 3.71e-19 a.4.1.9,a.121.1.1 131313,131314 2vkeA 208 3.73e-19 3bqyA 209 4.24e-19 1v7bA 185 6.29e-19 a.4.1.9,a.121.1.1 119861,119862 3bniA 229 7.37e-19 2rekA 199 7.49e-19 1a6i 217 8.02e-19 2vprA 207 8.82e-19 3bjbA 207 1.10e-18 2guhA 214 1.93e-18 2qkoA 215 2.00e-18 1t33A 224 2.64e-18 a.4.1.9,a.121.1.1 106295,106296 1zk8A 183 2.72e-18 a.4.1.9,a.121.1.1 125177,125178 2qwtA 196 6.59e-18 2zcmA 192 7.31e-18 2oi8A 216 1.10e-17 2gfnA 209 1.33e-17 a.4.1.9,a.121.1.1 135101,135102 1z0xA 220 4.68e-17 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 1.59e-16 2tct 207 5.94e-16 2g7lA 243 6.48e-16 a.4.1.9,a.121.1.1 134734,134735 2optA 234 7.95e-16 2hxoA 237 2.11e-15 2id3A 225 2.65e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 6.97e-12 a.4.1.9,a.121.1.1 134732,134733 1hlvA 131 1.099 a.4.1.7,a.4.1.7 65854,65855 2pg4A 95 1.325 2dt5A 211 1.438 a.4.5.38,c.2.1.12 131708,131709 2bnmA 198 1.441 a.35.1.3,b.82.1.10 128835,128836 2jn6A 97 1.468 2oxoA 103 1.587 2hpkA 208 1.761 6paxA 133 2.006 a.4.1.5,a.4.1.5 64758,64759 1c0wA 225 2.405 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 3bbyA 215 2.593 1lccA 51 2.948 a.35.1.5 17110 2ev0A 142 3.306 a.4.5.24,a.76.1.1 132413,132414 1cjgA 62 3.810 a.35.1.5 17112 3b7hA 78 3.922 1pdnC 128 4.004 a.4.1.5 16047 1xcbA 211 4.641 a.4.5.38,c.2.1.12 109552,109553 2pjpA 121 5.154 2bjcA 62 6.315 a.35.1.5 128620 1a5t 334 6.643 1s7oA 113 6.803 a.4.13.3 105354 1gwcA 230 7.864 a.45.1.1,c.47.1.5 70660,70661 1bi0 226 8.207 3bs3A 76 8.737 1gulA 222 10.36 a.45.1.1,c.47.1.5 17675,32969 2o3fA 111 11.87 1fseA 74 12.77 a.4.6.2 60000 1jkoC 52 14.16 a.4.1.2 66809 1utxA 66 14.24 a.35.1.3 108034 2qq9A 226 14.43 1jj2U 70 16.37 a.2.2.1 63106 2ictA 94 17.02 1zljA 78 17.33 1zr5A 214 17.61 c.50.1.2 125525 1u8bA 133 19.30 1on2A 142 20.74 a.4.5.24,a.76.1.1 87103,87104 1wsuA 124 20.96 a.4.5.35,a.4.5.35 121245,121246 2scpA 174 21.45 a.39.1.5 17256 2auwA 170 21.47 a.35.1.10,d.331.1.1 127339,127340 1je8A 82 24.09 a.4.6.2 77108 1r69A 69 25.18 a.35.1.2 17028 2aelA 374 25.32 1rzsA 61 25.41 a.35.1.2 105139 1neqA 74 25.79 a.35.1.2 17063 1hg5A 289 27.22 a.7.8.2,a.118.9.3 90360,90361 2zmvA 227 27.35 2croA 71 27.41 a.35.1.2 17038 1b0nA 111 27.50 a.34.1.1,a.35.1.3 17001,17064 2dtrA 226 29.17 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2cro 71 29.35 2blfA 373 29.69 1ret 43 30.52 1y9qA 192 30.57 a.35.1.8,b.82.1.15 116592,116593 1p4wA 99 31.03 a.4.6.2 87783 1y0uA 96 32.23 a.4.5.5 116310 3bzcA 785 34.39 1f3aA 222 35.37 a.45.1.1,c.47.1.5 17701,32995 1y7yA 74 36.03 a.35.1.3 122729 2ebyA 113 38.09 1vz0A 230 38.55 a.4.14.1,d.268.1.1 108929,108930 1sedA 117 39.91 a.219.1.1 105449 1l7vA 326 40.54 f.22.1.1 73672 3bct 457 40.57 2b5aA 77 42.17 a.35.1.3 127882 1wpkA 146 42.38 1ho8A 480 42.84 a.118.1.9 61107 1f5tA 121 43.15 a.4.5.24,a.76.1.1 16203,18409 1oqyA 368 44.21 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2h12A 436 45.42 1w07A 659 45.98 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 2e60A 101 48.05 1bl0A 129 48.38 a.4.1.8,a.4.1.8 16053,16054 1qpzA 340 50.35 a.35.1.5,c.93.1.1 17097,35673 3cecA 104 51.80 1v2aA 210 52.03 a.45.1.1,c.47.1.5 100263,100264 2a9dA 372 52.18 b.1.18.6,d.176.1.1 126431,126432 1es4A 262 52.88 e.3.1.1 42683 1tqmA 282 55.58 a.4.5.56,d.144.1.9 107236,107237 1vf1A 229 55.71 1r69 69 56.29 2r1jL 68 56.91 2q7eA 291 57.67 2fbkA 181 58.09 a.4.5.28 133247 1es2A 262 59.14 e.3.1.1 42680 1k3yA 221 59.58 a.45.1.1,c.47.1.5 77245,77246 1jftA 340 61.41 a.35.1.5,c.93.1.1 66652,66653 2ivmA 150 62.19 1skf 262 65.20 1k0dA 260 65.34 a.45.1.1,c.47.1.5 67930,67931 2on5A 206 66.40 2j3tD 219 66.72 2q7wA 396 67.26 1fw1A 216 67.68 a.45.1.1,c.47.1.5 60051,60052 2qz8A 149 67.82 1tadA 324 69.20 a.66.1.1,c.37.1.8 18194,32077 2cohA 202 69.53 a.4.5.4,b.82.3.2 130677,130678 1xsvA 113 70.52 a.4.13.3 116003 1m0uA 249 70.52 a.45.1.1,c.47.1.5 78359,78360 1a0eA 443 70.60 c.1.15.3 29537 2z1dA 372 70.71 1sfxA 109 72.03 a.4.5.50 105505 1aw9A 216 73.50 a.45.1.1,c.47.1.5 17736,33030 1k2xA 177 74.49 d.153.1.5 90929 1adrA 76 75.14 a.35.1.2 17042 2g64A 140 75.72 d.96.1.2 134694 3c8yA 574 75.87 1alvA 173 75.92 a.39.1.8 17370 1zy9A 564 76.39 b.30.5.11,c.1.8.13 125813,125814 1wdvA 152 77.26 d.116.1.1 114539 1r1uA 106 77.62 a.4.5.5 104771 1dlyA 164 77.67 a.1.1.1 14983 2dbbA 151 78.24 1b1bA 140 78.99 a.4.5.24,a.76.1.1 16215,18421 1tfeA 145 79.94 d.43.1.1 38680 2h09A 155 80.27 1k78A 149 80.40 a.4.1.5,a.4.1.5 68255,68256 1oyiA 82 80.92 a.4.5.19 93729 2yxoA 267 81.53 2vd8A 391 81.59 2f6rA 281 83.22 1vpwA 340 83.64 a.35.1.5,c.93.1.1 17087,35680 1ft9A 222 84.52 a.4.5.4,b.82.3.1 16107,28131 3bofA 566 85.55 1mmoB 384 85.95 a.25.1.2 16768 1iqpA 327 86.59 a.80.1.1,c.37.1.20 62649,62650 1vfsA 386 86.80 b.49.2.2,c.1.6.1 108584,108585 1d2rA 326 87.45 c.26.1.1 31572 2a8lA 420 88.40