# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 4.00e-24 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 1.47e-23 1rktA 205 2.44e-23 a.4.1.9,a.121.1.1 97623,97624 2uxuA 210 4.83e-23 1zkgA 212 5.17e-23 a.4.1.9,a.121.1.1 125194,125195 2id6A 202 6.35e-23 3bcgA 215 6.83e-23 2rasA 212 6.94e-23 3bruA 222 8.27e-23 2i10A 202 8.46e-23 a.4.1.9,a.121.1.1 136960,136961 2ibdA 204 1.16e-22 2g7sA 194 1.28e-22 a.4.1.9,a.121.1.1 134737,134738 2f07A 197 1.33e-22 2hyjA 200 1.99e-22 3crjA 199 2.58e-22 2iekA 200 2.62e-22 1z77A 200 2.63e-22 a.4.1.9,a.121.1.1 124588,124589 3bhqA 211 2.66e-22 2genA 197 2.66e-22 a.4.1.9,a.121.1.1 135062,135063 3ccyA 203 2.75e-22 1t56A 216 3.50e-22 a.4.1.9,a.121.1.1 106428,106429 1pb6A 212 3.56e-22 a.4.1.9,a.121.1.1 88017,88018 2dg7A 195 4.89e-22 2fq4A 192 5.15e-22 a.4.1.9,a.121.1.1 133937,133938 3cwrA 208 5.22e-22 2hytA 197 8.47e-22 2g3bA 208 8.97e-22 a.4.1.9,a.121.1.1 134558,134559 2nx4A 194 1.25e-21 1qvtA 194 1.30e-21 a.4.1.9,a.121.1.1 104602,104603 3cjdA 198 1.34e-21 2of7A 260 1.44e-21 2iaiA 230 1.64e-21 2raeA 207 1.83e-21 3cdlA 203 2.10e-21 1jt6A 188 2.24e-21 a.4.1.9,a.121.1.1 67247,67248 2qtqA 213 2.53e-21 2fx0A 201 2.84e-21 a.4.1.9,a.121.1.1 134269,134270 2zb9A 214 3.53e-21 2qcoA 210 4.25e-21 2jj7A 186 5.37e-21 3b81A 203 6.91e-21 1ui5A 215 8.34e-21 a.4.1.9,a.121.1.1 107856,107857 2np5A 203 9.18e-21 a.4.1.9,a.121.1.1 138424,138425 2yveA 185 1.22e-20 2o7tA 199 1.24e-20 2eh3A 179 1.32e-20 2o7oA 207 1.63e-20 a.4.1.9,a.121.1.1 138930,138931 2dg8A 193 1.69e-20 2q24A 194 2.32e-20 2fbqA 235 3.58e-20 a.4.1.9,a.121.1.1 133256,133257 3colA 196 3.85e-20 2hkuA 215 4.94e-20 3c2bA 221 5.45e-20 1sgmA 191 5.97e-20 a.4.1.9,a.121.1.1 105537,105538 2iu5A 195 7.10e-20 2qibA 231 1.27e-19 3bqyA 209 1.76e-19 2vkeA 208 2.68e-19 1a6i 217 2.82e-19 2fd5A 180 2.88e-19 a.4.1.9,a.121.1.1 133291,133292 2d6yA 202 2.89e-19 a.4.1.9,a.121.1.1 131313,131314 2vprA 207 3.32e-19 2guhA 214 3.46e-19 3bjbA 207 3.82e-19 1v7bA 185 3.83e-19 a.4.1.9,a.121.1.1 119861,119862 3bniA 229 4.78e-19 1zk8A 183 7.60e-19 a.4.1.9,a.121.1.1 125177,125178 2rekA 199 9.41e-19 1t33A 224 1.19e-18 a.4.1.9,a.121.1.1 106295,106296 2qkoA 215 2.67e-18 2gfnA 209 2.76e-18 a.4.1.9,a.121.1.1 135101,135102 2qwtA 196 3.52e-18 2oi8A 216 4.82e-18 2zcmA 192 8.68e-18 2oerA 214 2.73e-17 1z0xA 220 6.26e-17 a.4.1.9,a.121.1.1 124334,124335 2g7lA 243 1.81e-16 a.4.1.9,a.121.1.1 134734,134735 2optA 234 7.08e-16 2tct 207 9.54e-16 2hxoA 237 3.71e-15 2id3A 225 1.90e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 2.26e-11 a.4.1.9,a.121.1.1 134732,134733 2ev0A 142 1.518 a.4.5.24,a.76.1.1 132413,132414 1c0wA 225 1.857 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2oxoA 103 2.334 2jn6A 97 4.974 2dt5A 211 5.016 a.4.5.38,c.2.1.12 131708,131709 1f3aA 222 5.553 a.45.1.1,c.47.1.5 17701,32995 2pjpA 121 5.922 2pg4A 95 6.394 3bbyA 215 7.047 1hlvA 131 7.153 a.4.1.7,a.4.1.7 65854,65855 1on2A 142 7.364 a.4.5.24,a.76.1.1 87103,87104 2bnmA 198 8.126 a.35.1.3,b.82.1.10 128835,128836 6paxA 133 8.473 a.4.1.5,a.4.1.5 64758,64759 1ho8A 480 9.855 a.118.1.9 61107 1lccA 51 10.28 a.35.1.5 17110 1pdnC 128 10.89 a.4.1.5 16047 1gulA 222 10.90 a.45.1.1,c.47.1.5 17675,32969 1vf1A 229 11.15 1xcbA 211 11.29 a.4.5.38,c.2.1.12 109552,109553 2qq9A 226 13.12 1oqyA 368 14.56 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1jkoC 52 14.86 a.4.1.2 66809 1k3yA 221 15.58 a.45.1.1,c.47.1.5 77245,77246 1gwcA 230 15.69 a.45.1.1,c.47.1.5 70660,70661 1a5t 334 15.86 1gseA 221 15.92 a.45.1.1,c.47.1.5 17667,32961 2bjcA 62 16.77 a.35.1.5 128620 1bi0 226 17.73 2dtrA 226 18.18 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2blfA 373 18.73 1cjgA 62 18.99 a.35.1.5 17112 2hpkA 208 19.03 2fbkA 181 20.05 a.4.5.28 133247 1bl0A 129 20.34 a.4.1.8,a.4.1.8 16053,16054 3bzcA 785 21.61 1oe8A 211 21.81 a.45.1.1,c.47.1.5 86905,86906 1oktA 211 24.81 a.45.1.1,c.47.1.5 93272,93273 1b1bA 140 27.52 a.4.5.24,a.76.1.1 16215,18421 1yn9A 169 31.05 1w07A 659 31.24 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1m0uA 249 31.67 a.45.1.1,c.47.1.5 78359,78360 2ig3A 127 34.01 1alvA 173 34.16 a.39.1.8 17370 1fseA 74 34.48 a.4.6.2 60000 1ret 43 34.77 1mc3A 296 36.02 c.68.1.6 78943 1jj2U 70 37.67 a.2.2.1 63106 1wsuA 124 38.13 a.4.5.35,a.4.5.35 121245,121246 1pveA 72 38.62 a.189.1.1 104322 1hg5A 289 39.60 a.7.8.2,a.118.9.3 90360,90361 1wpkA 146 41.46 1zljA 78 43.11 1iyhA 198 43.18 a.45.1.1,c.47.1.5 83790,83791 1tadA 324 44.60 a.66.1.1,c.37.1.8 18194,32077 2gsqA 202 45.31 a.45.1.1,c.47.1.5 17715,33009 1neqA 74 47.70 a.35.1.2 17063 2sttA 96 50.13 a.4.5.21 16163 1fr2A 86 50.44 a.28.2.1 83256 2scpA 174 50.61 a.39.1.5 17256 2eiyA 308 53.28 2bbrA 195 54.24 3bs3A 76 56.37 1p4wA 99 56.40 a.4.6.2 87783 3b7hA 78 57.72 1iqpA 327 58.64 a.80.1.1,c.37.1.20 62649,62650 1kgsA 225 58.70 a.4.6.1,c.23.1.1 68596,68597 1je8A 82 60.40 a.4.6.2 77108 1fx7A 230 61.18 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1cei 94 63.12 2h09A 155 63.33 1vh0A 161 63.50 c.116.1.3 100626 1oyiA 82 63.81 a.4.5.19 93729 2a9dA 372 64.10 b.1.18.6,d.176.1.1 126431,126432 1tlqA 189 64.27 a.195.1.1 107134 2zmvA 227 65.02 1s7oA 113 67.94 a.4.13.3 105354 1rzsA 61 69.66 a.35.1.2 105139 1b0nA 111 70.07 a.34.1.1,a.35.1.3 17001,17064 1aw9A 216 70.43 a.45.1.1,c.47.1.5 17736,33030 1lea 84 70.93 3cbuA 214 72.40 2ntoA 201 72.50 1b48A 221 74.11 a.45.1.1,c.47.1.5 17703,32997 1kxrA 339 74.51 d.3.1.3 73175 2ictA 94 75.27 1ft9A 222 75.76 a.4.5.4,b.82.3.1 16107,28131 1es2A 262 75.87 e.3.1.1 42680 2j3tD 219 77.21 1y7lA 316 78.45 c.79.1.1 122695 1utxA 66 79.05 a.35.1.3 108034 1zy9A 564 79.60 b.30.5.11,c.1.8.13 125813,125814 3bct 457 80.31 1zr6A 503 82.10 2b8wA 328 82.14 1k3kA 158 83.54 f.1.4.1 72017 2hm2Q 89 84.03 1v2aA 210 86.70 a.45.1.1,c.47.1.5 100263,100264 1nrjB 218 88.07 c.37.1.8 86125 1vfsA 386 88.78 b.49.2.2,c.1.6.1 108584,108585 1g73A 162 89.32 a.7.4.1 16332