# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 3.42e-22 a.4.1.9,a.121.1.1 100720,100721 1rktA 205 9.17e-22 a.4.1.9,a.121.1.1 97623,97624 2pbxA 203 9.19e-22 2uxuA 210 2.12e-21 1zkgA 212 2.21e-21 a.4.1.9,a.121.1.1 125194,125195 2id6A 202 2.32e-21 3bruA 222 3.55e-21 3bcgA 215 3.66e-21 2i10A 202 4.35e-21 a.4.1.9,a.121.1.1 136960,136961 2rasA 212 4.94e-21 2ibdA 204 5.75e-21 2g7sA 194 6.02e-21 a.4.1.9,a.121.1.1 134737,134738 2hyjA 200 6.16e-21 2f07A 197 6.50e-21 1z77A 200 9.05e-21 a.4.1.9,a.121.1.1 124588,124589 2iekA 200 9.59e-21 3crjA 199 1.02e-20 2genA 197 1.07e-20 a.4.1.9,a.121.1.1 135062,135063 3bhqA 211 1.30e-20 1pb6A 212 1.51e-20 a.4.1.9,a.121.1.1 88017,88018 3ccyA 203 1.62e-20 1t56A 216 1.81e-20 a.4.1.9,a.121.1.1 106428,106429 2fq4A 192 2.53e-20 a.4.1.9,a.121.1.1 133937,133938 3cwrA 208 2.85e-20 2hytA 197 2.93e-20 2g3bA 208 2.97e-20 a.4.1.9,a.121.1.1 134558,134559 1qvtA 194 3.87e-20 a.4.1.9,a.121.1.1 104602,104603 2dg7A 195 4.39e-20 2iaiA 230 4.79e-20 2fx0A 201 4.83e-20 a.4.1.9,a.121.1.1 134269,134270 3cjdA 198 5.32e-20 2nx4A 194 5.70e-20 2qtqA 213 5.97e-20 2zb9A 214 6.34e-20 1jt6A 188 6.66e-20 a.4.1.9,a.121.1.1 67247,67248 2of7A 260 7.10e-20 3cdlA 203 7.30e-20 2raeA 207 8.00e-20 2jj7A 186 1.47e-19 2qcoA 210 1.56e-19 3b81A 203 1.95e-19 1ui5A 215 2.32e-19 a.4.1.9,a.121.1.1 107856,107857 2np5A 203 3.34e-19 a.4.1.9,a.121.1.1 138424,138425 2eh3A 179 3.78e-19 2q24A 194 5.85e-19 2o7tA 199 6.14e-19 2o7oA 207 7.70e-19 a.4.1.9,a.121.1.1 138930,138931 2hkuA 215 7.90e-19 2dg8A 193 8.15e-19 3colA 196 1.06e-18 3c2bA 221 1.10e-18 2yveA 185 1.38e-18 1sgmA 191 1.50e-18 a.4.1.9,a.121.1.1 105537,105538 2fbqA 235 1.98e-18 a.4.1.9,a.121.1.1 133256,133257 2iu5A 195 2.70e-18 2qibA 231 4.23e-18 3bqyA 209 4.99e-18 2vkeA 208 6.19e-18 2fd5A 180 6.22e-18 a.4.1.9,a.121.1.1 133291,133292 2d6yA 202 7.15e-18 a.4.1.9,a.121.1.1 131313,131314 2vprA 207 7.65e-18 3bjbA 207 8.12e-18 1a6i 217 8.92e-18 1v7bA 185 9.24e-18 a.4.1.9,a.121.1.1 119861,119862 2guhA 214 1.16e-17 3bniA 229 1.20e-17 1t33A 224 1.46e-17 a.4.1.9,a.121.1.1 106295,106296 2rekA 199 1.56e-17 1zk8A 183 2.50e-17 a.4.1.9,a.121.1.1 125177,125178 2gfnA 209 2.84e-17 a.4.1.9,a.121.1.1 135101,135102 2qwtA 196 5.99e-17 2qkoA 215 7.45e-17 2oi8A 216 1.57e-16 2zcmA 192 2.71e-16 2oerA 214 4.29e-16 1z0xA 220 1.04e-15 a.4.1.9,a.121.1.1 124334,124335 2g7lA 243 2.61e-15 a.4.1.9,a.121.1.1 134734,134735 2optA 234 5.26e-15 2tct 207 9.01e-15 2hxoA 237 2.86e-14 2id3A 225 6.29e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 4.16e-11 a.4.1.9,a.121.1.1 134732,134733 2oxoA 103 1.056 2ev0A 142 1.194 a.4.5.24,a.76.1.1 132413,132414 2dt5A 211 1.577 a.4.5.38,c.2.1.12 131708,131709 2jn6A 97 2.175 2pg4A 95 2.208 1xcbA 211 2.458 a.4.5.38,c.2.1.12 109552,109553 1c0wA 225 2.465 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2bnmA 198 2.743 a.35.1.3,b.82.1.10 128835,128836 6paxA 133 3.013 a.4.1.5,a.4.1.5 64758,64759 2pjpA 121 3.016 1hlvA 131 3.245 a.4.1.7,a.4.1.7 65854,65855 1on2A 142 3.462 a.4.5.24,a.76.1.1 87103,87104 1lccA 51 4.234 a.35.1.5 17110 1pdnC 128 5.322 a.4.1.5 16047 1jkoC 52 5.945 a.4.1.2 66809 1a5t 334 5.955 3bbyA 215 6.384 2hpkA 208 7.564 1gulA 222 9.090 a.45.1.1,c.47.1.5 17675,32969 1f3aA 222 9.215 a.45.1.1,c.47.1.5 17701,32995 2blfA 373 9.575 1cjgA 62 9.869 a.35.1.5 17112 2bjcA 62 9.878 a.35.1.5 128620 1fseA 74 11.53 a.4.6.2 60000 1vf1A 229 11.71 1wsuA 124 12.35 a.4.5.35,a.4.5.35 121245,121246 3b7hA 78 12.81 1zljA 78 14.28 1gwcA 230 14.61 a.45.1.1,c.47.1.5 70660,70661 2qq9A 226 14.70 3bs3A 76 14.94 1gseA 221 15.67 a.45.1.1,c.47.1.5 17667,32961 1wpkA 146 16.07 1ho8A 480 16.08 a.118.1.9 61107 1k3yA 221 16.23 a.45.1.1,c.47.1.5 77245,77246 1s7oA 113 16.28 a.4.13.3 105354 1neqA 74 16.41 a.35.1.2 17063 3bzcA 785 16.48 2cdnA 201 17.29 c.37.1.1 130289 1bi0 226 20.30 1je8A 82 21.06 a.4.6.2 77108 1oktA 211 21.71 a.45.1.1,c.47.1.5 93272,93273 1bl0A 129 21.75 a.4.1.8,a.4.1.8 16053,16054 1b0nA 111 23.25 a.34.1.1,a.35.1.3 17001,17064 1oe8A 211 24.77 a.45.1.1,c.47.1.5 86905,86906 2ig3A 127 25.43 1p4wA 99 25.54 a.4.6.2 87783 1w07A 659 26.15 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1utxA 66 26.43 a.35.1.3 108034 1pveA 72 26.82 a.189.1.1 104322 1tadA 324 26.83 a.66.1.1,c.37.1.8 18194,32077 1sedA 117 26.96 a.219.1.1 105449 2a9dA 372 27.20 b.1.18.6,d.176.1.1 126431,126432 1zr5A 214 27.29 c.50.1.2 125525 1jj2U 70 28.23 a.2.2.1 63106 2gsqA 202 29.19 a.45.1.1,c.47.1.5 17715,33009 1lea 84 29.67 1yn9A 169 29.79 1ret 43 29.81 1u8bA 133 29.90 1oqyA 368 32.17 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2ictA 94 32.77 1rzsA 61 32.80 a.35.1.2 105139 2scpA 174 33.54 a.39.1.5 17256 2cro 71 34.68 2j3tD 219 35.44 1b1bA 140 35.82 a.4.5.24,a.76.1.1 16215,18421 2zmvA 227 36.40 2auwA 170 38.01 a.35.1.10,d.331.1.1 127339,127340 1vz0A 230 38.49 a.4.14.1,d.268.1.1 108929,108930 2croA 71 38.75 a.35.1.2 17038 2dtrA 226 38.91 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1rp3A 239 39.83 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1oyiA 82 40.71 a.4.5.19 93729 1b48A 221 40.80 a.45.1.1,c.47.1.5 17703,32997 2fbkA 181 40.86 a.4.5.28 133247 1y9qA 192 44.20 a.35.1.8,b.82.1.15 116592,116593 1iqpA 327 44.72 a.80.1.1,c.37.1.20 62649,62650 2eiyA 308 45.28 1hg5A 289 46.77 a.7.8.2,a.118.9.3 90360,90361 1m0uA 249 46.92 a.45.1.1,c.47.1.5 78359,78360 2h09A 155 49.77 2ivmA 150 50.48 1k3kA 158 51.82 f.1.4.1 72017 1tlqA 189 53.35 a.195.1.1 107134 1fx7A 230 54.46 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1y0uA 96 54.74 a.4.5.5 116310 1efaA 333 55.92 a.35.1.5,c.93.1.1 17106,35691 1ib2A 349 56.27 a.118.1.8 62141 1r69A 69 57.18 a.35.1.2 17028 2vd8A 391 57.38 1vfsA 386 60.24 b.49.2.2,c.1.6.1 108584,108585 1jftA 340 60.53 a.35.1.5,c.93.1.1 66652,66653 2f6rA 281 60.68 1vpwA 340 61.03 a.35.1.5,c.93.1.1 17087,35680 1sfxA 109 62.10 a.4.5.50 105505 1nfp 228 63.84 1iyhA 198 63.85 a.45.1.1,c.47.1.5 83790,83791 3c8yA 574 66.37 1f5tA 121 68.55 a.4.5.24,a.76.1.1 16203,18409 1alvA 173 70.55 a.39.1.8 17370 1zgwA 139 71.28 2r1jL 68 71.47 1gcvA 140 73.72 a.1.1.2 15410 2q7wA 396 75.77 2ebyA 113 76.16 2nrlA 147 79.62 1adrA 76 83.12 a.35.1.2 17042 3co8A 380 83.23 1fr2A 86 83.24 a.28.2.1 83256 3bct 457 83.92 1mxrA 375 86.12 a.25.1.2 85197 1topA 162 86.86 a.39.1.5 17223 1wa5B 530 87.26 a.118.1.1 114432 1ub9A 100 88.74 a.4.5.28 99159 2b5aA 77 89.50 a.35.1.3 127882