# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 6.53e-23 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 1.31e-22 1rktA 205 2.58e-22 a.4.1.9,a.121.1.1 97623,97624 1zkgA 212 4.61e-22 a.4.1.9,a.121.1.1 125194,125195 2id6A 202 6.30e-22 2uxuA 210 7.39e-22 3bruA 222 8.18e-22 2rasA 212 9.80e-22 3bcgA 215 1.00e-21 2i10A 202 1.13e-21 a.4.1.9,a.121.1.1 136960,136961 2ibdA 204 1.22e-21 2g7sA 194 1.29e-21 a.4.1.9,a.121.1.1 134737,134738 2f07A 197 1.35e-21 2hyjA 200 1.72e-21 2iekA 200 2.33e-21 2genA 197 2.72e-21 a.4.1.9,a.121.1.1 135062,135063 3bhqA 211 3.11e-21 3crjA 199 3.34e-21 1z77A 200 3.46e-21 a.4.1.9,a.121.1.1 124588,124589 3ccyA 203 4.54e-21 1pb6A 212 4.71e-21 a.4.1.9,a.121.1.1 88017,88018 1t56A 216 4.72e-21 a.4.1.9,a.121.1.1 106428,106429 3cwrA 208 7.51e-21 2fq4A 192 7.70e-21 a.4.1.9,a.121.1.1 133937,133938 2dg7A 195 8.91e-21 2hytA 197 9.09e-21 2g3bA 208 9.10e-21 a.4.1.9,a.121.1.1 134558,134559 1qvtA 194 1.13e-20 a.4.1.9,a.121.1.1 104602,104603 3cjdA 198 1.44e-20 2qtqA 213 1.53e-20 1jt6A 188 1.55e-20 a.4.1.9,a.121.1.1 67247,67248 2iaiA 230 1.56e-20 2raeA 207 2.15e-20 2nx4A 194 2.15e-20 2fx0A 201 2.46e-20 a.4.1.9,a.121.1.1 134269,134270 2of7A 260 2.52e-20 3cdlA 203 2.54e-20 2zb9A 214 2.96e-20 2jj7A 186 4.85e-20 3b81A 203 5.54e-20 2qcoA 210 7.13e-20 1ui5A 215 7.27e-20 a.4.1.9,a.121.1.1 107856,107857 2np5A 203 7.68e-20 a.4.1.9,a.121.1.1 138424,138425 2o7tA 199 1.11e-19 2eh3A 179 1.45e-19 2o7oA 207 1.56e-19 a.4.1.9,a.121.1.1 138930,138931 2q24A 194 1.80e-19 2yveA 185 1.89e-19 2dg8A 193 2.55e-19 3colA 196 2.97e-19 2hkuA 215 3.17e-19 3c2bA 221 3.25e-19 2iu5A 195 3.86e-19 1sgmA 191 5.14e-19 a.4.1.9,a.121.1.1 105537,105538 2fbqA 235 6.07e-19 a.4.1.9,a.121.1.1 133256,133257 2qibA 231 6.17e-19 3bqyA 209 1.15e-18 2vkeA 208 1.28e-18 2vprA 207 2.00e-18 1a6i 217 2.15e-18 3bjbA 207 2.34e-18 2d6yA 202 2.91e-18 a.4.1.9,a.121.1.1 131313,131314 2fd5A 180 3.02e-18 a.4.1.9,a.121.1.1 133291,133292 1v7bA 185 3.13e-18 a.4.1.9,a.121.1.1 119861,119862 2rekA 199 3.56e-18 3bniA 229 3.69e-18 2guhA 214 5.55e-18 1t33A 224 8.82e-18 a.4.1.9,a.121.1.1 106295,106296 1zk8A 183 9.28e-18 a.4.1.9,a.121.1.1 125177,125178 2gfnA 209 1.45e-17 a.4.1.9,a.121.1.1 135101,135102 2qwtA 196 1.60e-17 2qkoA 215 2.76e-17 2oi8A 216 4.01e-17 2zcmA 192 7.97e-17 2oerA 214 1.47e-16 1z0xA 220 2.36e-16 a.4.1.9,a.121.1.1 124334,124335 2g7lA 243 1.15e-15 a.4.1.9,a.121.1.1 134734,134735 2tct 207 2.97e-15 2optA 234 3.82e-15 2hxoA 237 1.28e-14 2id3A 225 4.19e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 2.02e-11 a.4.1.9,a.121.1.1 134732,134733 2oxoA 103 0.8001 2pjpA 121 1.034 2ev0A 142 1.081 a.4.5.24,a.76.1.1 132413,132414 1pdnC 128 1.201 a.4.1.5 16047 2jn6A 97 1.510 2dt5A 211 1.528 a.4.5.38,c.2.1.12 131708,131709 1c0wA 225 1.844 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 6paxA 133 2.054 a.4.1.5,a.4.1.5 64758,64759 2pg4A 95 2.312 1xcbA 211 2.635 a.4.5.38,c.2.1.12 109552,109553 2bnmA 198 2.696 a.35.1.3,b.82.1.10 128835,128836 1hlvA 131 2.794 a.4.1.7,a.4.1.7 65854,65855 1a5t 334 3.186 1on2A 142 3.342 a.4.5.24,a.76.1.1 87103,87104 1lccA 51 3.973 a.35.1.5 17110 1cjgA 62 5.348 a.35.1.5 17112 3bbyA 215 5.715 2bjcA 62 6.369 a.35.1.5 128620 2qq9A 226 7.062 1bi0 226 7.622 2hpkA 208 8.685 1jkoC 52 8.750 a.4.1.2 66809 1neqA 74 9.305 a.35.1.2 17063 1ho8A 480 11.19 a.118.1.9 61107 3b7hA 78 11.67 1fseA 74 11.67 a.4.6.2 60000 1gulA 222 12.10 a.45.1.1,c.47.1.5 17675,32969 1zljA 78 12.40 2blfA 373 13.02 1wsuA 124 14.21 a.4.5.35,a.4.5.35 121245,121246 1s7oA 113 14.38 a.4.13.3 105354 1gwcA 230 14.58 a.45.1.1,c.47.1.5 70660,70661 1tadA 324 14.87 a.66.1.1,c.37.1.8 18194,32077 1wpkA 146 14.91 1p4wA 99 15.37 a.4.6.2 87783 1vf1A 229 15.37 3bs3A 76 17.83 1ret 43 17.90 1w07A 659 18.26 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1je8A 82 19.40 a.4.6.2 77108 1u8bA 133 20.59 1gseA 221 20.84 a.45.1.1,c.47.1.5 17667,32961 1b1bA 140 21.23 a.4.5.24,a.76.1.1 16215,18421 1b0nA 111 21.88 a.34.1.1,a.35.1.3 17001,17064 1bl0A 129 23.17 a.4.1.8,a.4.1.8 16053,16054 2dtrA 226 23.43 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1vz0A 230 26.53 a.4.14.1,d.268.1.1 108929,108930 3bzcA 785 27.94 1oe8A 211 28.48 a.45.1.1,c.47.1.5 86905,86906 2cro 71 28.54 1f3aA 222 28.75 a.45.1.1,c.47.1.5 17701,32995 1utxA 66 29.04 a.35.1.3 108034 2scpA 174 30.95 a.39.1.5 17256 1lea 84 31.33 2a9dA 372 32.16 b.1.18.6,d.176.1.1 126431,126432 2croA 71 33.19 a.35.1.2 17038 2ictA 94 35.04 2cdnA 201 36.75 c.37.1.1 130289 1jj2U 70 36.87 a.2.2.1 63106 1y9qA 192 37.46 a.35.1.8,b.82.1.15 116592,116593 1hcrA 52 37.53 a.4.1.2 16020 1rzsA 61 39.51 a.35.1.2 105139 2auwA 170 39.97 a.35.1.10,d.331.1.1 127339,127340 2ig3A 127 40.23 1iyhA 198 40.38 a.45.1.1,c.47.1.5 83790,83791 1k3kA 158 40.70 f.1.4.1 72017 1rp3A 239 40.76 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 2h09A 155 44.42 1r69A 69 45.23 a.35.1.2 17028 1fx7A 230 45.52 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 3co8A 380 46.05 1hg5A 289 46.74 a.7.8.2,a.118.9.3 90360,90361 1k3yA 221 47.30 a.45.1.1,c.47.1.5 77245,77246 2fbkA 181 48.46 a.4.5.28 133247 1y0uA 96 48.84 a.4.5.5 116310 2aelA 374 49.43 2r1jL 68 50.11 1oktA 211 50.27 a.45.1.1,c.47.1.5 93272,93273 2ivmA 150 50.43 1yn9A 169 50.63 2dtr 226 50.70 2zmvA 227 51.10 1vfsA 386 51.25 b.49.2.2,c.1.6.1 108584,108585 1adrA 76 52.86 a.35.1.2 17042 1m0uA 249 53.02 a.45.1.1,c.47.1.5 78359,78360 1tr0A 108 54.68 d.58.4.4 107261 2bnxA 386 54.73 a.118.1.23 128861 2ebyA 113 54.90 1oyiA 82 56.51 a.4.5.19 93729 1sfxA 109 57.63 a.4.5.50 105505 1resA 43 59.08 a.4.1.2 16023 1sedA 117 60.15 a.219.1.1 105449 1k78A 149 61.24 a.4.1.5,a.4.1.5 68255,68256 1f5tA 121 63.08 a.4.5.24,a.76.1.1 16203,18409 2cohA 202 63.70 a.4.5.4,b.82.3.2 130677,130678 1g73A 162 64.20 a.7.4.1 16332 1pveA 72 64.25 a.189.1.1 104322 1zr5A 214 65.03 c.50.1.2 125525 1mc3A 296 65.82 c.68.1.6 78943 1fr2A 86 67.78 a.28.2.1 83256 1gcvA 140 71.33 a.1.1.2 15410 2vd8A 391 71.52 1h2eA 207 71.86 c.60.1.1 70857 1jftA 340 71.96 a.35.1.5,c.93.1.1 66652,66653 1v2aA 210 71.99 a.45.1.1,c.47.1.5 100263,100264 1fewA 184 72.39 a.7.4.1 16334 2gsqA 202 73.27 a.45.1.1,c.47.1.5 17715,33009 1es2A 262 73.44 e.3.1.1 42680 2j3tD 219 74.24 2q88A 257 75.99 2eiyA 308 76.86 1zgwA 139 77.28 1vpwA 340 77.79 a.35.1.5,c.93.1.1 17087,35680 3c8yA 574 78.61 2b8wA 328 78.72 3cloA 258 79.69 1qpzA 340 80.13 a.35.1.5,c.93.1.1 17097,35673 1iqpA 327 81.63 a.80.1.1,c.37.1.20 62649,62650 2zcwA 202 83.86 1xsvA 113 84.98 a.4.13.3 116003 1ib2A 349 85.04 a.118.1.8 62141 1a0eA 443 86.08 c.1.15.3 29537 1r1uA 106 87.41 a.4.5.5 104771