# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 1.03e-24 a.4.1.9,a.121.1.1 100720,100721 3bcgA 215 3.26e-24 2uxuA 210 3.31e-24 1rktA 205 9.58e-24 a.4.1.9,a.121.1.1 97623,97624 2pbxA 203 1.43e-23 3bruA 222 1.89e-23 2f07A 197 2.10e-23 2id6A 202 2.76e-23 1zkgA 212 3.41e-23 a.4.1.9,a.121.1.1 125194,125195 2i10A 202 4.31e-23 a.4.1.9,a.121.1.1 136960,136961 2hyjA 200 7.79e-23 2g7sA 194 8.06e-23 a.4.1.9,a.121.1.1 134737,134738 3bhqA 211 8.38e-23 1pb6A 212 8.52e-23 a.4.1.9,a.121.1.1 88017,88018 2rasA 212 9.15e-23 2genA 197 1.03e-22 a.4.1.9,a.121.1.1 135062,135063 3crjA 199 1.21e-22 2hytA 197 1.22e-22 1z77A 200 1.34e-22 a.4.1.9,a.121.1.1 124588,124589 3cwrA 208 1.37e-22 2fq4A 192 1.37e-22 a.4.1.9,a.121.1.1 133937,133938 1t56A 216 1.47e-22 a.4.1.9,a.121.1.1 106428,106429 2ibdA 204 1.52e-22 2iekA 200 1.88e-22 2dg7A 195 2.49e-22 3ccyA 203 3.06e-22 2raeA 207 5.17e-22 2of7A 260 7.54e-22 3cdlA 203 9.11e-22 1qvtA 194 1.07e-21 a.4.1.9,a.121.1.1 104602,104603 2nx4A 194 1.09e-21 2jj7A 186 1.10e-21 2g3bA 208 1.23e-21 a.4.1.9,a.121.1.1 134558,134559 2iaiA 230 1.43e-21 2qtqA 213 1.73e-21 2np5A 203 1.73e-21 a.4.1.9,a.121.1.1 138424,138425 3cjdA 198 1.74e-21 2fx0A 201 1.80e-21 a.4.1.9,a.121.1.1 134269,134270 1jt6A 188 3.25e-21 a.4.1.9,a.121.1.1 67247,67248 2zb9A 214 3.62e-21 2qcoA 210 4.27e-21 3b81A 203 6.60e-21 3colA 196 6.84e-21 1ui5A 215 7.98e-21 a.4.1.9,a.121.1.1 107856,107857 2q24A 194 3.21e-20 2qibA 231 3.22e-20 2fbqA 235 4.63e-20 a.4.1.9,a.121.1.1 133256,133257 2eh3A 179 6.59e-20 3c2bA 221 7.32e-20 1sgmA 191 1.30e-19 a.4.1.9,a.121.1.1 105537,105538 2o7tA 199 2.35e-19 2d6yA 202 2.65e-19 a.4.1.9,a.121.1.1 131313,131314 2yveA 185 2.74e-19 2guhA 214 2.85e-19 3bjbA 207 4.45e-19 2fd5A 180 4.94e-19 a.4.1.9,a.121.1.1 133291,133292 1a6i 217 5.59e-19 2hkuA 215 6.90e-19 2gfnA 209 9.62e-19 a.4.1.9,a.121.1.1 135101,135102 2o7oA 207 1.48e-18 a.4.1.9,a.121.1.1 138930,138931 2dg8A 193 1.54e-18 1v7bA 185 1.95e-18 a.4.1.9,a.121.1.1 119861,119862 3bqyA 209 2.15e-18 2qwtA 196 2.27e-18 1t33A 224 2.87e-18 a.4.1.9,a.121.1.1 106295,106296 2rekA 199 3.14e-18 1zk8A 183 4.70e-18 a.4.1.9,a.121.1.1 125177,125178 2iu5A 195 5.42e-18 2vkeA 208 1.20e-17 2vprA 207 1.30e-17 3bniA 229 1.48e-17 2oi8A 216 2.34e-17 1z0xA 220 4.00e-17 a.4.1.9,a.121.1.1 124334,124335 2qkoA 215 4.05e-17 2zcmA 192 7.99e-17 2oerA 214 5.51e-16 2tct 207 6.41e-16 2id3A 225 1.93e-15 a.4.1.9,a.121.1.1 137261,137262 2optA 234 4.09e-15 2g7lA 243 4.87e-15 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 3.40e-14 2g7gA 213 4.43e-10 a.4.1.9,a.121.1.1 134732,134733 2oxoA 103 0.8798 1bupA 386 7.436 c.55.1.1,c.55.1.1 33377,33378 1ho8A 480 12.66 a.118.1.9 61107 2hpkA 208 13.49 1gwcA 230 13.60 a.45.1.1,c.47.1.5 70660,70661 1qnrA 344 14.24 c.1.8.3 28834 2f6hX 419 16.49 2scpA 174 21.31 a.39.1.5 17256 1ba1 386 21.63 2gsoA 393 25.22 1ft9A 222 28.39 a.4.5.4,b.82.3.1 16107,28131 1gseA 221 29.65 a.45.1.1,c.47.1.5 17667,32961 2napA 723 30.51 b.52.2.2,c.81.1.1 26926,35334 1kay 381 39.37 1fj2A 232 39.80 c.69.1.14 34720 2imiA 221 40.32 1m0uA 249 40.68 a.45.1.1,c.47.1.5 78359,78360 1egaA 301 42.41 c.37.1.8,d.52.3.1 32150,38836 2gsqA 202 44.23 a.45.1.1,c.47.1.5 17715,33009 2dt5A 211 44.52 a.4.5.38,c.2.1.12 131708,131709 1cpt 412 45.92 1glqA 209 46.83 a.45.1.1,c.47.1.5 17588,32882 3bbyA 215 51.44 1vf1A 229 51.89 2obnA 349 53.66 1pgtA 210 55.33 a.45.1.1,c.47.1.5 17515,32809 1ebbA 202 56.18 c.60.1.1 64900 1gulA 222 56.27 a.45.1.1,c.47.1.5 17675,32969 1oqyA 368 59.37 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1p5tA 127 59.73 b.55.1.2 94148 1k8kA 418 60.54 c.55.1.1,c.55.1.1 68305,68306 1bccD 241 61.13 a.3.1.3,f.23.11.1 15959,43698 1qynA 153 63.72 d.33.1.1 96597 1wsuA 124 63.77 a.4.5.35,a.4.5.35 121245,121246 1svsA 353 64.80 c.37.1.8 106051 1ppjD 241 69.31 a.3.1.3,f.23.11.1 104258,104259 2bvyA 475 73.26 b.1.18.2,c.1.8.3 129301,129302 1h2eA 207 73.39 c.60.1.1 70857 2b20A 403 74.01 b.1.18.20,c.69.1.2 127685,127686 1yuwA 554 79.13 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1fztA 211 82.08 c.60.1.1 60158 1neeA 138 82.55 d.241.1.1,g.59.1.1 91841,91842 1r59O 505 82.61 c.55.1.4,c.55.1.4 111697,111698 2fjlA 150 83.57 b.55.1.1 133611 2itmA 484 84.53 1t9mA 214 86.03 b.45.1.1 112364 2vl6A 268 86.20 1uzeA 589 86.86 d.92.1.5 108174 1apyA 162 88.10 d.153.1.5 42004 1hd5A 213 88.24 b.52.1.1 26896 2pw6A 271 88.63 1i5pA 633 89.37 b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1uby 367 89.82