# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 3.34e-26 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 1.54e-25 1rktA 205 3.64e-25 a.4.1.9,a.121.1.1 97623,97624 3bcgA 215 5.01e-25 2uxuA 210 5.25e-25 3bruA 222 6.05e-25 2g7sA 194 8.54e-25 a.4.1.9,a.121.1.1 134737,134738 2id6A 202 1.22e-24 2f07A 197 1.26e-24 2i10A 202 1.59e-24 a.4.1.9,a.121.1.1 136960,136961 1zkgA 212 1.69e-24 a.4.1.9,a.121.1.1 125194,125195 1pb6A 212 1.73e-24 a.4.1.9,a.121.1.1 88017,88018 3crjA 199 1.88e-24 2rasA 212 2.00e-24 2ibdA 204 2.18e-24 2genA 197 2.54e-24 a.4.1.9,a.121.1.1 135062,135063 3bhqA 211 3.59e-24 3ccyA 203 3.79e-24 2hyjA 200 4.13e-24 1t56A 216 4.19e-24 a.4.1.9,a.121.1.1 106428,106429 1z77A 200 7.74e-24 a.4.1.9,a.121.1.1 124588,124589 2hytA 197 8.11e-24 2iekA 200 8.44e-24 2nx4A 194 9.69e-24 3cwrA 208 1.62e-23 2dg7A 195 1.89e-23 2raeA 207 1.98e-23 2g3bA 208 1.99e-23 a.4.1.9,a.121.1.1 134558,134559 2fq4A 192 2.23e-23 a.4.1.9,a.121.1.1 133937,133938 2qtqA 213 2.31e-23 1qvtA 194 2.99e-23 a.4.1.9,a.121.1.1 104602,104603 2of7A 260 3.24e-23 2iaiA 230 3.30e-23 2fx0A 201 4.15e-23 a.4.1.9,a.121.1.1 134269,134270 3cdlA 203 5.00e-23 3cjdA 198 5.05e-23 2np5A 203 5.40e-23 a.4.1.9,a.121.1.1 138424,138425 2jj7A 186 5.41e-23 1jt6A 188 7.13e-23 a.4.1.9,a.121.1.1 67247,67248 2zb9A 214 1.07e-22 1ui5A 215 2.04e-22 a.4.1.9,a.121.1.1 107856,107857 3b81A 203 2.56e-22 2q24A 194 2.97e-22 2qcoA 210 3.78e-22 2eh3A 179 4.98e-22 3colA 196 5.75e-22 2o7tA 199 9.69e-22 2fbqA 235 1.19e-21 a.4.1.9,a.121.1.1 133256,133257 2yveA 185 1.31e-21 2qibA 231 1.84e-21 2dg8A 193 2.17e-21 1sgmA 191 4.28e-21 a.4.1.9,a.121.1.1 105537,105538 2d6yA 202 5.55e-21 a.4.1.9,a.121.1.1 131313,131314 3bjbA 207 5.69e-21 3c2bA 221 7.47e-21 2o7oA 207 7.92e-21 a.4.1.9,a.121.1.1 138930,138931 2fd5A 180 8.11e-21 a.4.1.9,a.121.1.1 133291,133292 2hkuA 215 9.50e-21 2guhA 214 1.03e-20 1a6i 217 1.26e-20 3bqyA 209 1.73e-20 3bniA 229 1.78e-20 1v7bA 185 2.24e-20 a.4.1.9,a.121.1.1 119861,119862 1t33A 224 2.95e-20 a.4.1.9,a.121.1.1 106295,106296 2gfnA 209 3.72e-20 a.4.1.9,a.121.1.1 135101,135102 2vprA 207 3.78e-20 1zk8A 183 4.46e-20 a.4.1.9,a.121.1.1 125177,125178 2rekA 199 4.67e-20 2iu5A 195 5.45e-20 2qwtA 196 5.81e-20 2vkeA 208 8.27e-20 2qkoA 215 2.18e-19 2zcmA 192 7.39e-19 2oi8A 216 8.23e-19 1z0xA 220 2.46e-18 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 1.82e-17 2optA 234 3.26e-17 2g7lA 243 4.95e-17 a.4.1.9,a.121.1.1 134734,134735 2tct 207 9.12e-17 2id3A 225 1.63e-15 a.4.1.9,a.121.1.1 137261,137262 2hxoA 237 6.59e-15 2g7gA 213 6.12e-11 a.4.1.9,a.121.1.1 134732,134733 2oxoA 103 0.5858 3bbyA 215 5.478 1ft9A 222 6.624 a.4.5.4,b.82.3.1 16107,28131 1pdnC 128 7.809 a.4.1.5 16047 6paxA 133 8.533 a.4.1.5,a.4.1.5 64758,64759 1gseA 221 8.919 a.45.1.1,c.47.1.5 17667,32961 1gwcA 230 11.43 a.45.1.1,c.47.1.5 70660,70661 2cgpA 210 11.56 a.4.5.4,b.82.3.2 16102,28141 1a5t 334 13.30 1i6xA 209 13.74 a.4.5.4,b.82.3.2 83673,83674 1ho8A 480 14.67 a.118.1.9 61107 2pjpA 121 18.93 1vf1A 229 19.44 1xrsB 262 19.52 c.23.6.1,d.230.4.1 115884,115885 2ev0A 142 21.03 a.4.5.24,a.76.1.1 132413,132414 2fmyA 220 21.22 2pg4A 95 24.85 1omiA 248 25.15 b.82.3.3,a.4.5.4 87079,87080 2hpkA 208 25.18 2bvyA 475 25.39 b.1.18.2,c.1.8.3 129301,129302 1fx3A 169 26.30 d.33.1.1 38524 2f6hX 419 27.22 1m12A 84 28.98 a.64.1.1 84745 2scpA 174 30.05 a.39.1.5 17256 1y5eA 169 30.07 c.57.1.1 122632 3d0cA 314 30.18 1lccA 51 30.63 a.35.1.5 17110 2bjcA 62 31.12 a.35.1.5 128620 2gauA 232 32.99 a.4.5.4,b.82.3.2 134894,134895 2bl0B 145 33.25 2dt5A 211 33.90 a.4.5.38,c.2.1.12 131708,131709 1oe8A 211 35.49 a.45.1.1,c.47.1.5 86905,86906 1on2A 142 35.67 a.4.5.24,a.76.1.1 87103,87104 2sttA 96 36.20 a.4.5.21 16163 2d1hA 109 38.47 a.4.5.50 131125 1cjgA 62 39.01 a.35.1.5 17112 1k3yA 221 39.68 a.45.1.1,c.47.1.5 77245,77246 1m0uA 249 39.68 a.45.1.1,c.47.1.5 78359,78360 1gulA 222 42.02 a.45.1.1,c.47.1.5 17675,32969 2zcwA 202 42.53 1c4zA 358 42.97 d.148.1.1 41766 2cohA 202 43.41 a.4.5.4,b.82.3.2 130677,130678 1zybA 232 43.61 a.4.5.4,b.82.3.2 125815,125816 2fjlA 150 44.97 b.55.1.1 133611 1oqyA 368 45.69 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2jn6A 97 45.73 1qynA 153 48.25 d.33.1.1 96597 1hw5A 210 51.32 a.4.5.4,b.82.3.2 16098,28137 2gsqA 202 51.51 a.45.1.1,c.47.1.5 17715,33009 2zbxA 412 51.70 1jj2U 70 53.02 a.2.2.1 63106 1c0wA 225 53.10 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1yn9A 169 53.13 2yxoA 267 55.36 2osxA 481 55.89 1mkzA 172 57.39 c.57.1.1 84998 1b48A 221 57.61 a.45.1.1,c.47.1.5 17703,32997 1i4jA 110 59.02 d.55.1.1 76734 2g3vA 208 59.12 1tfjA 219 61.53 1oktA 211 62.44 a.45.1.1,c.47.1.5 93272,93273 2uuqA 414 63.31 1wsuA 124 65.83 a.4.5.35,a.4.5.35 121245,121246 1j3wA 163 66.01 d.110.7.1 90833 1lea 84 67.39 1jr3A 373 67.50 a.80.1.1,c.37.1.20 63245,63246 1nstA 325 67.71 c.37.1.5 31951 2q0zX 339 67.75 1svsA 353 68.04 c.37.1.8 106051 1f3aA 222 70.90 a.45.1.1,c.47.1.5 17701,32995 1y7qA 98 71.11 a.28.3.2 122714 2blfA 373 72.35 1vkjA 285 72.53 c.37.1.5 108666 2h6bA 250 75.01 1b71A 191 76.34 a.25.1.1,g.41.5.1 16647,45246 1g6nA 210 78.68 a.4.5.4,b.82.3.2 16100,28139 1tfeA 145 83.64 d.43.1.1 38680 1pveA 72 85.64 a.189.1.1 104322 1qnrA 344 87.16 c.1.8.3 28834