# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 5.47e-15 a.4.1.9,a.121.1.1 100720,100721 2uxuA 210 1.11e-14 1t56A 216 3.05e-14 a.4.1.9,a.121.1.1 106428,106429 1pb6A 212 1.26e-13 a.4.1.9,a.121.1.1 88017,88018 3bruA 222 1.50e-13 2pbxA 203 1.79e-13 3bhqA 211 1.85e-13 1rktA 205 2.61e-13 a.4.1.9,a.121.1.1 97623,97624 2genA 197 3.62e-13 a.4.1.9,a.121.1.1 135062,135063 1z77A 200 4.30e-13 a.4.1.9,a.121.1.1 124588,124589 2g7sA 194 4.96e-13 a.4.1.9,a.121.1.1 134737,134738 3bcgA 215 5.49e-13 2f07A 197 5.65e-13 2id6A 202 8.35e-13 2ibdA 204 9.77e-13 1qvtA 194 1.00e-12 a.4.1.9,a.121.1.1 104602,104603 2hyjA 200 1.08e-12 2iaiA 230 1.25e-12 3crjA 199 1.74e-12 3ccyA 203 1.96e-12 1zkgA 212 1.99e-12 a.4.1.9,a.121.1.1 125194,125195 1jt6A 188 2.68e-12 a.4.1.9,a.121.1.1 67247,67248 2iekA 200 3.47e-12 3cdlA 203 3.56e-12 2hytA 197 5.46e-12 3cjdA 198 6.38e-12 2fq4A 192 7.91e-12 a.4.1.9,a.121.1.1 133937,133938 2nx4A 194 9.60e-12 2qtqA 213 1.10e-11 2rasA 212 2.24e-11 2o7tA 199 2.35e-11 3b81A 203 2.81e-11 2zb9A 214 3.11e-11 2fx0A 201 6.48e-11 a.4.1.9,a.121.1.1 134269,134270 2i10A 202 6.70e-11 a.4.1.9,a.121.1.1 136960,136961 2g3bA 208 9.93e-11 a.4.1.9,a.121.1.1 134558,134559 3colA 196 1.06e-10 1ui5A 215 1.19e-10 a.4.1.9,a.121.1.1 107856,107857 3cwrA 208 1.23e-10 3c2bA 221 1.43e-10 2qibA 231 1.78e-10 1sgmA 191 2.54e-10 a.4.1.9,a.121.1.1 105537,105538 2jj7A 186 2.66e-10 2qwtA 196 2.94e-10 2q24A 194 2.97e-10 2hkuA 215 3.80e-10 2rekA 199 4.41e-10 2dg7A 195 4.63e-10 2zcmA 192 5.57e-10 2id3A 225 7.29e-10 a.4.1.9,a.121.1.1 137261,137262 2np5A 203 8.63e-10 a.4.1.9,a.121.1.1 138424,138425 1zk8A 183 1.34e-09 a.4.1.9,a.121.1.1 125177,125178 2d6yA 202 2.29e-09 a.4.1.9,a.121.1.1 131313,131314 2qcoA 210 2.32e-09 2eh3A 179 2.63e-09 2of7A 260 7.15e-09 1t33A 224 8.77e-09 a.4.1.9,a.121.1.1 106295,106296 1v7bA 185 1.08e-08 a.4.1.9,a.121.1.1 119861,119862 2raeA 207 1.41e-08 2oi8A 216 2.11e-08 2g7lA 243 2.32e-08 a.4.1.9,a.121.1.1 134734,134735 2fbqA 235 2.52e-08 a.4.1.9,a.121.1.1 133256,133257 2dg8A 193 3.44e-08 2vkeA 208 5.21e-08 3bqyA 209 5.70e-08 2tct 207 6.17e-08 2gfnA 209 7.19e-08 a.4.1.9,a.121.1.1 135101,135102 2o7oA 207 7.50e-08 a.4.1.9,a.121.1.1 138930,138931 3bniA 229 1.14e-07 3bjbA 207 1.17e-07 1z0xA 220 1.50e-07 a.4.1.9,a.121.1.1 124334,124335 2guhA 214 2.06e-07 2qkoA 215 2.24e-07 2fd5A 180 2.40e-07 a.4.1.9,a.121.1.1 133291,133292 2iu5A 195 2.47e-07 1a6i 217 2.55e-07 2yveA 185 3.20e-07 2optA 234 4.75e-07 2vprA 207 5.42e-07 2hxoA 237 2.71e-06 2g7gA 213 4.18e-06 a.4.1.9,a.121.1.1 134732,134733 2oerA 214 8.42e-05 1aisB 200 1.685 a.74.1.2,a.74.1.2 18384,18385 1d3uB 201 1.955 a.74.1.2,a.74.1.2 18386,18387 2fdvA 476 2.583 2v9dA 343 3.826 1glqA 209 4.985 a.45.1.1,c.47.1.5 17588,32882 1c9bA 207 6.292 a.74.1.2,a.74.1.2 18372,18373 2hi4A 495 6.446 1jr3A 373 6.468 a.80.1.1,c.37.1.20 63245,63246 3bbyA 215 7.455 1b48A 221 8.000 a.45.1.1,c.47.1.5 17703,32997 2on5A 206 9.204 1l5oA 356 9.479 c.39.1.1 77711 2gsqA 202 9.911 a.45.1.1,c.47.1.5 17715,33009 1o5kA 306 11.27 c.1.10.1 92504 1ea5A 537 11.27 c.69.1.1 34592 2aawA 222 12.55 a.45.1.1,c.47.1.5 126496,126497 1gulA 222 12.62 a.45.1.1,c.47.1.5 17675,32969 3c6gA 479 12.76 1sh5A 245 15.88 a.40.1.1,a.40.1.1 105543,105544 1d0vA 356 16.57 c.39.1.1 32476 1pgtA 210 16.66 a.45.1.1,c.47.1.5 17515,32809 1lbkA 208 16.76 a.45.1.1,c.47.1.5 73809,73810 2d2sA 235 16.88 a.118.17.2 131188 1gseA 221 18.92 a.45.1.1,c.47.1.5 17667,32961 1tw9A 206 19.97 a.45.1.1,c.47.1.5 107381,107382 1r9oA 477 20.16 a.104.1.1 104878 2q02A 272 20.74 1tlqA 189 21.18 a.195.1.1 107134 1r8sE 203 21.58 a.118.3.1 97248 1f74A 293 22.12 c.1.10.1 29079 1tu7A 208 22.15 a.45.1.1,c.47.1.5 112653,112654 1oktA 211 22.33 a.45.1.1,c.47.1.5 93272,93273 2d2mC 147 22.66 1ihp 438 24.78 6gsvA 217 25.09 a.45.1.1,c.47.1.5 17633,32925 1b4pA 217 25.12 a.45.1.1,c.47.1.5 83158,83159 1qagA 226 25.51 a.40.1.1,a.40.1.1 17400,17401 2btdA 210 25.86 1pbvA 195 25.97 a.118.3.1 19179 1j33A 335 26.13 c.39.1.1 77069 2r91A 286 26.32 2vr4A 846 27.00 1ee4A 423 27.99 a.118.1.1 19128 2a2rA 210 28.81 a.45.1.1,c.47.1.5 126058,126059 2je8A 848 28.96 2vjxA 846 29.19 3cnyA 301 30.52 3c8mA 331 31.83 2ondA 308 32.76 1k3yA 221 33.88 a.45.1.1,c.47.1.5 77245,77246 1pbv 195 34.98 1zejA 293 35.38 1m0uA 249 35.61 a.45.1.1,c.47.1.5 78359,78360 2cvdA 198 36.58 a.45.1.1,c.47.1.5 130861,130862 2ehhA 294 37.11 1volA 204 38.01 a.74.1.2,a.74.1.2 18370,18371 1fdyA 297 38.23 c.1.10.1 29071 1eg3A 261 38.93 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 2q9uA 414 39.42 1dugA 234 39.46 a.45.1.1,c.47.1.5 17718,33012 2f48A 555 39.48 c.89.1.1 132915 2imsA 171 39.71 1r8mE 203 40.76 a.118.3.1 97242 1od2A 805 41.69 c.14.1.4,c.14.1.4 86821,86822 1yzfA 195 42.26 c.23.10.5 124275 1f3aA 222 42.73 a.45.1.1,c.47.1.5 17701,32995 2vc6A 292 43.10 1lvaA 258 44.60 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1a05A 358 46.64 c.77.1.1 35059 1bu2A 229 46.67 a.74.1.1,a.74.1.1 18360,18361 1tfb 208 46.96 1s8nA 205 47.25 c.23.1.1 105374 1fw1A 216 47.76 a.45.1.1,c.47.1.5 60051,60052 3biqA 467 48.29 1nal1 297 49.00 1nigA 152 49.05 a.25.2.1 85740 2o2pA 517 49.06 1g7oA 215 49.51 a.45.1.1,c.47.1.5 60332,60333 6paxA 133 50.34 a.4.1.5,a.4.1.5 64758,64759 2r8wA 332 52.63 1m1nA 491 54.13 c.92.2.3 78417 2f2hA 773 56.18 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1g8iA 190 56.40 a.39.1.5 60363 2d0eA 407 56.93 1oqyA 368 58.11 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 17gsA 210 58.54 a.45.1.1,c.47.1.5 17524,32818 1n2aA 201 59.62 a.45.1.1,c.47.1.5 91553,91554 2cmd 312 60.62 1azwA 313 62.09 c.69.1.7 34658 2ejwA 332 65.07 1aqwA 209 65.38 a.45.1.1,c.47.1.5 17517,32811 2hnlA 225 65.65 1jlwA 219 66.49 a.45.1.1,c.47.1.5 71741,71742 1xsjA 778 66.57 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1hl2A 297 66.60 c.1.10.1 83581 2pvqA 201 66.80 2pgeA 377 67.94 2bwjA 199 68.47 2bfdA 400 68.63 2ogyA 262 68.91 1p1xA 260 69.47 c.1.10.1 104060 1h1lA 481 69.76 c.92.2.3 70851 1iyhA 198 70.22 a.45.1.1,c.47.1.5 83790,83791 1sxjE 354 70.60 a.80.1.1,c.37.1.20 106089,106090 1eywA 331 71.01 c.1.9.3 29057 2p74A 263 71.28 3bct 457 72.58 2ifuA 307 72.62 1umdA 367 72.64 c.36.1.11 99599 2pbyA 308 73.26 1wx1A 335 74.59 1n40A 396 75.07 a.104.1.1 79977 1gwcA 230 75.38 a.45.1.1,c.47.1.5 70660,70661 1yt3A 375 75.76 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994 1nal3 297 76.06 1crxA 322 76.10 a.60.9.1,d.163.1.1 18097,42157 2fr7A 412 77.58 2ve3A 444 80.48 1pd21 199 81.74 1rt8A 513 81.84 a.40.1.1 105095 1i0dA 332 85.50 c.1.9.3 61487 1qh8A 478 85.60 c.92.2.3 35633 2oxoA 103 86.06 2d2mA 140 86.31 2qdjA 304 86.70 2c1vA 338 87.00 2gdrA 202 87.48 2d09A 407 87.71 1pscA 365 89.06 c.1.9.3 29058 1jcjA 260 89.33 c.1.10.1 66499 1rec 201 89.41