Best Alignments for TR454

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2uxuA	9.2170e-25	2uxuA/TR454-2uxuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2f07A	1.4044e-24	2f07A/TR454-2f07A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ibdA	3.8845e-24	2ibdA/TR454-2ibdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3c2bA	3.2049e-23	3c2bA/TR454-3c2bA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2d6yA	3.7765e-23	2d6yA/TR454-2d6yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
1qvtA	4.0171e-23	1qvtA/TR454-1qvtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
1vi0A	4.3104e-23	1vi0A/TR454-1vi0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
2genA	5.1176e-23	2genA/TR454-2genA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
1jt6A	1.1982e-22	1jt6A/TR454-1jt6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
2g3bA	1.4024e-22	2g3bA/TR454-2g3bA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
1t56A	2.1110e-22	1t56A/TR454-1t56A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
3bhqA	2.5270e-22	3bhqA/TR454-3bhqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1z77A	2.5405e-22	1z77A/TR454-1z77A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
2qcoA	2.6497e-22	2qcoA/TR454-2qcoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1rktA	3.3374e-22	1rktA/TR454-1rktA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
3bcgA	4.8634e-22	3bcgA/TR454-3bcgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3cdlA	4.8641e-22	3cdlA/TR454-3cdlA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2hkuA	5.0276e-22	2hkuA/TR454-2hkuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2iu5A	6.0165e-22	2iu5A/TR454-2iu5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2hyjA	6.2224e-22	2hyjA/TR454-2hyjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001