# List of top-scoring protein chains for TR454.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 9.40e-21 a.4.1.9,a.121.1.1 100720,100721 1pb6A 212 1.32e-19 a.4.1.9,a.121.1.1 88017,88018 3cdlA 203 7.29e-19 3bcgA 215 1.44e-18 3bruA 222 1.81e-18 2ibdA 204 8.01e-18 2f07A 197 2.40e-17 2uxuA 210 2.60e-17 2iaiA 230 4.65e-17 2iekA 200 9.75e-17 2id6A 202 9.80e-17 1zkgA 212 9.88e-17 a.4.1.9,a.121.1.1 125194,125195 2genA 197 2.16e-16 a.4.1.9,a.121.1.1 135062,135063 3bhqA 211 2.56e-16 2hytA 197 2.72e-16 2eh3A 179 3.20e-16 2g7sA 194 3.58e-16 a.4.1.9,a.121.1.1 134737,134738 2i10A 202 1.14e-15 a.4.1.9,a.121.1.1 136960,136961 3ccyA 203 1.29e-15 2g3bA 208 1.39e-15 a.4.1.9,a.121.1.1 134558,134559 3crjA 199 1.97e-15 2q24A 194 2.51e-15 1ui5A 215 3.09e-15 a.4.1.9,a.121.1.1 107856,107857 2pbxA 203 3.57e-15 2gfnA 209 4.24e-15 a.4.1.9,a.121.1.1 135101,135102 1rktA 205 5.78e-15 a.4.1.9,a.121.1.1 97623,97624 3c07A 273 6.21e-15 2nx4A 194 6.34e-15 1jt6A 188 7.02e-15 a.4.1.9,a.121.1.1 67247,67248 1rkwA 194 7.90e-15 a.4.1.9,a.121.1.1 104967,104968 1qvtA 194 8.38e-15 a.4.1.9,a.121.1.1 104602,104603 2d6yA 202 2.00e-14 a.4.1.9,a.121.1.1 131313,131314 2fx0A 201 2.14e-14 a.4.1.9,a.121.1.1 134269,134270 3cjdA 198 2.18e-14 2of7A 260 2.42e-14 2zcmA 192 3.12e-14 2hyjA 200 3.92e-14 1t56A 216 3.93e-14 a.4.1.9,a.121.1.1 106428,106429 1u9nA 236 3.93e-14 a.4.1.9,a.121.1.1 113246,113247 2fq4A 192 4.10e-14 a.4.1.9,a.121.1.1 133937,133938 2zcnA 192 5.03e-14 1sgmA 191 5.12e-14 a.4.1.9,a.121.1.1 105537,105538 2raeA 207 5.31e-14 2qibA 231 6.00e-14 2qcoA 210 6.84e-14 2jj7A 186 1.16e-13 2qwtA 196 1.38e-13 2fbqA 235 1.58e-13 a.4.1.9,a.121.1.1 133256,133257 2np5A 203 2.01e-13 a.4.1.9,a.121.1.1 138424,138425 2qtqA 213 2.82e-13 3bjbA 207 1.05e-12 2zb9A 214 1.35e-12 3b81A 203 1.78e-12 3bniA 229 1.91e-12 2np3A 212 2.35e-12 a.4.1.9,a.121.1.1 138420,138421 2id3A 225 3.09e-12 a.4.1.9,a.121.1.1 137261,137262 2oerA 214 4.48e-12 2guhA 214 6.19e-12 2pz9A 226 7.43e-12 2rekA 199 8.27e-12 2rasA 212 9.30e-12 3cwrA 208 1.04e-11 2dg8A 193 1.67e-11 3colA 196 2.19e-11 2fd5A 180 2.81e-11 a.4.1.9,a.121.1.1 133291,133292 3c2bA 221 5.97e-11 2dg7A 195 8.06e-11 2zozA 183 1.32e-10 2zoyA 185 1.38e-10 2yveA 185 1.40e-10 2yvhA 177 1.40e-10 2ns7A 208 1.79e-10 3bqyA 209 3.65e-10 1qpiA 203 5.25e-10 a.4.1.9,a.121.1.1 16072,19249 2vkeA 208 5.25e-10 2tctA 207 5.25e-10 a.4.1.9,a.121.1.1 16063,19240 2o7oA 207 5.25e-10 a.4.1.9,a.121.1.1 138930,138931 2trtA 217 5.49e-10 a.4.1.9,a.121.1.1 16064,19241 2hxiA 241 6.25e-10 2oi8A 216 6.69e-10 1zk8A 183 8.25e-10 a.4.1.9,a.121.1.1 125177,125178 1t33A 224 1.08e-09 a.4.1.9,a.121.1.1 106295,106296 1a6iA 217 1.79e-09 a.4.1.9,a.121.1.1 16066,19243 2vprA 207 3.57e-09 2o7tA 199 3.83e-09 1z0xA 220 4.43e-09 a.4.1.9,a.121.1.1 124334,124335 2vkvA 208 6.38e-09 2qkoA 215 6.54e-09 2hkuA 215 1.18e-08 2hxoA 237 1.14e-07 2g7lA 243 2.45e-07 a.4.1.9,a.121.1.1 134734,134735 2optA 234 3.23e-07 2iu5A 195 8.37e-07 2g7gA 213 9.53e-07 a.4.1.9,a.121.1.1 134732,134733 2e85A 159 3.527 2i8lA 156 3.617 1pveA 72 5.648 a.189.1.1 104322 1zt2A 330 6.653 d.264.1.1 125624 2pg4A 95 7.398 2o5hA 136 9.587 1hlvA 131 9.654 a.4.1.7,a.4.1.7 65854,65855 2dvyA 226 10.17 1pruA 56 13.66 a.35.1.5 17104 2zaiA 497 15.90 1pufB 73 17.06 a.4.1.1 95132 1b72B 87 19.03 a.4.1.1 16001 1du6A 64 19.66 a.4.1.1 16002 1b8iB 63 21.87 a.4.1.1 16011 1j4zA 547 29.44 a.129.1.1,c.8.5.1,d.56.1.1 90838,90839,90840 1kp8A 547 30.81 a.129.1.1,c.8.5.1,d.56.1.1 84414,84415,84416 2eu1A 548 31.52 1svtA 524 31.89 1ss8A 524 32.18 1sx3A 525 32.20 1lfuP 82 32.44 a.4.1.1 77939 1xckA 547 32.63 1gr5A 547 32.92 i.16.1.1 65478 1s7oA 113 34.48 a.4.13.3 105354 2rhbA 353 35.38 1ku9A 152 36.28 a.4.5.36 77544 3dbiA 338 36.65 1mhyD 521 39.23 a.25.1.2 16780 2ozkA 346 42.03 3fruA 269 42.26 b.1.1.2,d.19.1.1 20657,38150 1uxcA 65 45.10 a.35.1.5 17119 2f4mB 61 45.53 a.189.1.1 132931 1oelA 547 45.79 a.129.1.1,c.8.5.1,d.56.1.1 19452,30781,38900 1grlA 548 46.31 a.129.1.1,c.8.5.1,d.56.1.1 19487,30816,38935 1kftA 78 46.60 a.60.2.3 77375 2yyvA 227 47.31 2bjcA 62 48.10 a.35.1.5 128620 2e3dA 302 50.25 2d1sA 548 50.27 2qsjA 154 52.56 1dk7A 146 52.56 c.8.5.1 30772 2d1tA 548 52.98 1uscA 178 57.31 b.45.1.2 99860 1jonA 155 57.52 c.8.5.1 30780 3bbdA 205 62.33 1lccA 51 66.60 a.35.1.5 17110 3ctpA 330 67.08 2e0zA 345 76.13 1yycA 174 77.81 1ud9A 245 79.26 d.131.1.2,d.131.1.2 107768,107769 2jn6A 97 79.41 1lqcA 56 82.25 a.35.1.5 17109 3cuoA 99 82.63 1t9mA 214 87.22 b.45.1.1 112364