# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 6.18e-20 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 1.04e-19 1jt6A 188 1.44e-19 a.4.1.9,a.121.1.1 67247,67248 1qvtA 194 1.65e-19 a.4.1.9,a.121.1.1 104602,104603 2ibdA 204 1.82e-19 2uxuA 210 3.11e-19 3ccyA 203 3.62e-19 2hyjA 200 4.21e-19 1rktA 205 5.99e-19 a.4.1.9,a.121.1.1 97623,97624 1t56A 216 6.47e-19 a.4.1.9,a.121.1.1 106428,106429 2g7sA 194 7.92e-19 a.4.1.9,a.121.1.1 134737,134738 1pb6A 212 8.03e-19 a.4.1.9,a.121.1.1 88017,88018 3bruA 222 8.55e-19 2qtqA 213 9.21e-19 2f07A 197 1.02e-18 2fq4A 192 1.33e-18 a.4.1.9,a.121.1.1 133937,133938 2genA 197 1.38e-18 a.4.1.9,a.121.1.1 135062,135063 2iekA 200 2.48e-18 2rasA 212 2.77e-18 3c2bA 221 2.88e-18 3bhqA 211 3.17e-18 1z77A 200 3.25e-18 a.4.1.9,a.121.1.1 124588,124589 3crjA 199 3.30e-18 1zkgA 212 3.42e-18 a.4.1.9,a.121.1.1 125194,125195 1ui5A 215 3.76e-18 a.4.1.9,a.121.1.1 107856,107857 3cdlA 203 4.11e-18 2id6A 202 4.26e-18 3bcgA 215 4.60e-18 2raeA 207 5.96e-18 2hytA 197 7.14e-18 2nx4A 194 7.49e-18 2zb9A 214 7.84e-18 2zcmA 192 8.01e-18 3cwrA 208 9.10e-18 2iaiA 230 1.05e-17 2qcoA 210 1.17e-17 2o7tA 199 1.58e-17 2dg7A 195 2.00e-17 2gfnA 209 2.88e-17 a.4.1.9,a.121.1.1 135101,135102 2i10A 202 3.38e-17 a.4.1.9,a.121.1.1 136960,136961 2id3A 225 3.57e-17 a.4.1.9,a.121.1.1 137261,137262 1sgmA 191 3.71e-17 a.4.1.9,a.121.1.1 105537,105538 2jj7A 186 4.04e-17 3b81A 203 4.06e-17 1zk8A 183 4.15e-17 a.4.1.9,a.121.1.1 125177,125178 2qibA 231 5.31e-17 2qkoA 215 5.68e-17 2tct 207 6.74e-17 3cjdA 198 7.46e-17 2g3bA 208 9.19e-17 a.4.1.9,a.121.1.1 134558,134559 2d6yA 202 9.33e-17 a.4.1.9,a.121.1.1 131313,131314 2np5A 203 9.48e-17 a.4.1.9,a.121.1.1 138424,138425 3bqyA 209 1.31e-16 2fbqA 235 1.59e-16 a.4.1.9,a.121.1.1 133256,133257 3colA 196 1.96e-16 2optA 234 2.07e-16 2rekA 199 3.12e-16 2q24A 194 3.17e-16 2of7A 260 3.39e-16 2hkuA 215 3.45e-16 2fx0A 201 4.22e-16 a.4.1.9,a.121.1.1 134269,134270 2o7oA 207 4.51e-16 a.4.1.9,a.121.1.1 138930,138931 3bniA 229 4.80e-16 3bjbA 207 5.58e-16 2oerA 214 6.26e-16 2fd5A 180 6.38e-16 a.4.1.9,a.121.1.1 133291,133292 2iu5A 195 6.52e-16 1a6i 217 6.99e-16 2g7gA 213 8.25e-16 a.4.1.9,a.121.1.1 134732,134733 2vkeA 208 9.50e-16 1z0xA 220 1.64e-15 a.4.1.9,a.121.1.1 124334,124335 2oi8A 216 1.96e-15 2dg8A 193 2.42e-15 2eh3A 179 2.52e-15 2vprA 207 2.56e-15 2qwtA 196 3.21e-15 2yveA 185 3.26e-15 2guhA 214 3.82e-15 2hxoA 237 5.28e-15 1v7bA 185 5.87e-15 a.4.1.9,a.121.1.1 119861,119862 1t33A 224 7.06e-14 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 3.46e-13 a.4.1.9,a.121.1.1 134734,134735 1hlvA 131 0.4392 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 0.4563 2dt5A 211 0.8012 a.4.5.38,c.2.1.12 131708,131709 2ev0A 142 2.511 a.4.5.24,a.76.1.1 132413,132414 2rn7A 108 2.973 2v9vA 135 3.132 1wsuA 124 3.315 a.4.5.35,a.4.5.35 121245,121246 2qq9A 226 3.412 1bl0A 129 4.035 a.4.1.8,a.4.1.8 16053,16054 2pg4A 95 4.042 1xsvA 113 4.522 a.4.13.3 116003 1xcbA 211 5.022 a.4.5.38,c.2.1.12 109552,109553 1fseA 74 10.85 a.4.6.2 60000 1l3lA 234 12.00 a.4.6.2,d.110.5.1 73541,73542 1zljA 78 12.18 1y7yA 74 12.85 a.35.1.3 122729 1je8A 82 13.01 a.4.6.2 77108 2ahrA 259 13.67 a.100.1.10,c.2.1.6 126775,126776 1z5hA 780 14.08 1sfxA 109 14.78 a.4.5.50 105505 1tu7A 208 14.92 a.45.1.1,c.47.1.5 112653,112654 3co4A 312 17.06 1b0nA 111 17.22 a.34.1.1,a.35.1.3 17001,17064 1y9qA 192 17.54 a.35.1.8,b.82.1.15 116592,116593 2zfoC 147 18.64 1zcaA 359 19.57 a.66.1.1,c.37.1.8 124897,124898 1resA 43 20.49 a.4.1.2 16023 1lrvA 244 20.61 a.118.1.5 19146 1a0pA 290 21.02 a.60.9.1,d.163.1.1 18105,42165 2gsqA 202 21.60 a.45.1.1,c.47.1.5 17715,33009 1on2A 142 21.64 a.4.5.24,a.76.1.1 87103,87104 1x9fA 151 22.04 a.1.1.2 114983 3b7hA 78 22.96 2o09A 189 23.43 1lrv 244 24.54 2de3A 365 25.27 1xo0A 324 25.41 a.60.9.1,d.163.1.1 115674,115675 1kz7A 353 25.90 a.87.1.1,b.55.1.1 73333,73334 2imsA 171 26.10 1a0p 290 26.42 1utxA 66 27.08 a.35.1.3 108034 2dtrA 226 27.40 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2ictA 94 27.80 2ifuA 307 29.10 2o8xA 70 29.77 2b5aA 77 30.17 a.35.1.3 127882 1wa5B 530 31.04 a.118.1.1 114432 1rzsA 61 31.91 a.35.1.2 105139 2ftsA 419 33.46 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 2dh2A 424 33.56 1yuzA 202 35.73 a.25.1.1,g.41.5.1 124077,124078 2bnmA 198 35.89 a.35.1.3,b.82.1.10 128835,128836 1jkoC 52 36.60 a.4.1.2 66809 1jlvA 209 36.68 a.45.1.1,c.47.1.5 71729,71730 1x9fB 145 37.48 a.1.1.2 114984 1js3A 486 37.60 c.67.1.6 67215 2rfpA 171 37.87 2nszA 129 38.85 a.118.1.14 138560 1adrA 76 40.50 a.35.1.2 17042 1mkmA 249 41.77 a.4.5.33,d.110.2.2 79242,79243 1u8bA 133 43.01 1yqgA 263 43.80 2cx5A 158 44.83 2a2rA 210 45.94 a.45.1.1,c.47.1.5 126058,126059 2o3fA 111 46.34 2ebyA 113 46.54 2h09A 155 47.12 3bddA 142 47.95 3cuoA 99 48.11 1z91A 147 48.19 a.4.5.28 124736 3ddeA 239 49.20 1px5A 349 49.58 a.160.1.2,d.218.1.6 95277,95278 1k1xA 659 50.55 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1zy9A 564 52.79 b.30.5.11,c.1.8.13 125813,125814 1lbkA 208 53.72 a.45.1.1,c.47.1.5 73809,73810 2izzA 322 55.28 2graA 277 55.41 1vflA 356 55.69 c.1.9.1 120041 2z0xA 158 55.89 3bs3A 76 55.91 2cro 71 56.45 1r69A 69 57.33 a.35.1.2 17028 2c1mA 424 57.69 2fnaA 357 58.16 a.4.5.11,c.37.1.20 133809,133810 1tadA 324 58.25 a.66.1.1,c.37.1.8 18194,32077 1r69 69 59.89 2rcyA 262 60.24 1jftA 340 60.70 a.35.1.5,c.93.1.1 66652,66653 1g7oA 215 61.21 a.45.1.1,c.47.1.5 60332,60333 2r1jL 68 61.39 1oywA 523 62.22 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1ouvA 273 62.40 a.118.18.1 93570 1k3yA 221 63.83 a.45.1.1,c.47.1.5 77245,77246 1wdvA 152 64.59 d.116.1.1 114539 2pbyA 308 65.50 2g7uA 257 67.05 1s3jA 155 67.70 a.4.5.28 98437 1b6g 310 68.89 2h27A 73 68.93 a.4.13.2 135993 1dlyA 164 69.42 a.1.1.1 14983 1vz0A 230 70.13 a.4.14.1,d.268.1.1 108929,108930 1oe8A 211 70.16 a.45.1.1,c.47.1.5 86905,86906 2ia2A 265 71.45 2ah5A 210 71.78 c.108.1.6 126742 2btzA 394 72.17 3b8dA 363 72.17 2c71A 216 72.67 c.6.2.3 130017 1fx7A 230 72.87 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2g1kA 176 72.96 c.37.1.2 134519 1g2hA 61 73.75 a.4.1.12 60224 2iyvA 184 75.91 c.37.1.2 137812 1sedA 117 76.28 a.219.1.1 105449 2d4zA 250 77.09 d.37.1.1,d.37.1.1 131260,131261 2hnlA 225 77.48 2nvoA 535 78.04 1k0dA 260 78.38 a.45.1.1,c.47.1.5 67930,67931 2v1xA 591 80.47 1s69A 124 80.58 a.1.1.1 105305 1f1eA 154 81.62 a.22.1.2 64927 1a0cA 438 81.81 c.1.15.3 29529 2ofyA 86 82.02 1lmb3 92 82.08 2croA 71 82.13 a.35.1.2 17038 1lucA 355 84.03 c.1.16.1 29547 2qwwA 154 85.10 3cucA 291 85.62 3cecA 104 87.91 2fjrA 189 89.16 1tqhA 247 89.37 c.69.1.29 107225 1ijbA 202 89.77 c.62.1.1 71229 1lj9A 144 89.87 a.4.5.28 78035 3bwgA 239 89.99