# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 2.02e-22 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 3.21e-22 1jt6A 188 5.06e-22 a.4.1.9,a.121.1.1 67247,67248 1qvtA 194 5.56e-22 a.4.1.9,a.121.1.1 104602,104603 2uxuA 210 8.60e-22 2ibdA 204 1.05e-21 2hyjA 200 1.15e-21 3ccyA 203 1.60e-21 1rktA 205 1.73e-21 a.4.1.9,a.121.1.1 97623,97624 1pb6A 212 1.82e-21 a.4.1.9,a.121.1.1 88017,88018 1t56A 216 2.14e-21 a.4.1.9,a.121.1.1 106428,106429 2g7sA 194 2.45e-21 a.4.1.9,a.121.1.1 134737,134738 2f07A 197 4.74e-21 3bruA 222 4.96e-21 2genA 197 6.00e-21 a.4.1.9,a.121.1.1 135062,135063 2qtqA 213 6.07e-21 2fq4A 192 6.65e-21 a.4.1.9,a.121.1.1 133937,133938 3c2bA 221 9.15e-21 1z77A 200 1.01e-20 a.4.1.9,a.121.1.1 124588,124589 3cjdA 198 1.02e-20 3cdlA 203 1.07e-20 3bhqA 211 1.17e-20 3crjA 199 1.30e-20 2iekA 200 1.30e-20 1zkgA 212 1.54e-20 a.4.1.9,a.121.1.1 125194,125195 2id6A 202 1.69e-20 2rasA 212 1.69e-20 3bcgA 215 1.91e-20 1ui5A 215 2.72e-20 a.4.1.9,a.121.1.1 107856,107857 2nx4A 194 3.20e-20 2zcmA 192 3.64e-20 2qcoA 210 4.90e-20 2zb9A 214 4.94e-20 2hytA 197 5.12e-20 3cwrA 208 6.39e-20 2iaiA 230 6.91e-20 2raeA 207 8.27e-20 2o7tA 199 1.00e-19 2dg7A 195 1.20e-19 1sgmA 191 1.32e-19 a.4.1.9,a.121.1.1 105537,105538 2qkoA 215 2.01e-19 2id3A 225 2.08e-19 a.4.1.9,a.121.1.1 137261,137262 2gfnA 209 2.22e-19 a.4.1.9,a.121.1.1 135101,135102 2i10A 202 2.88e-19 a.4.1.9,a.121.1.1 136960,136961 2tct 207 3.03e-19 1zk8A 183 3.10e-19 a.4.1.9,a.121.1.1 125177,125178 2jj7A 186 3.57e-19 3b81A 203 3.99e-19 2qibA 231 5.95e-19 2np5A 203 7.05e-19 a.4.1.9,a.121.1.1 138424,138425 2d6yA 202 9.00e-19 a.4.1.9,a.121.1.1 131313,131314 2optA 234 1.24e-18 2g3bA 208 1.27e-18 a.4.1.9,a.121.1.1 134558,134559 3bqyA 209 1.51e-18 2fbqA 235 1.52e-18 a.4.1.9,a.121.1.1 133256,133257 3colA 196 1.66e-18 2of7A 260 2.81e-18 3bjbA 207 3.23e-18 2rekA 199 3.66e-18 2q24A 194 3.83e-18 1a6i 217 4.22e-18 2o7oA 207 4.40e-18 a.4.1.9,a.121.1.1 138930,138931 2fx0A 201 4.55e-18 a.4.1.9,a.121.1.1 134269,134270 2fd5A 180 5.29e-18 a.4.1.9,a.121.1.1 133291,133292 2hkuA 215 5.33e-18 2oerA 214 5.81e-18 2iu5A 195 6.53e-18 2vkeA 208 6.83e-18 2g7gA 213 7.39e-18 a.4.1.9,a.121.1.1 134732,134733 3bniA 229 8.41e-18 2oi8A 216 1.54e-17 2vprA 207 1.64e-17 1z0xA 220 1.97e-17 a.4.1.9,a.121.1.1 124334,124335 2eh3A 179 2.94e-17 2dg8A 193 3.06e-17 2qwtA 196 3.76e-17 2hxoA 237 3.87e-17 2guhA 214 4.70e-17 2yveA 185 6.75e-17 1v7bA 185 1.23e-16 a.4.1.9,a.121.1.1 119861,119862 1t33A 224 1.14e-15 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 5.78e-15 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.4487 1hlvA 131 0.6919 a.4.1.7,a.4.1.7 65854,65855 2ev0A 142 1.126 a.4.5.24,a.76.1.1 132413,132414 1wsuA 124 1.215 a.4.5.35,a.4.5.35 121245,121246 2dt5A 211 1.241 a.4.5.38,c.2.1.12 131708,131709 2rn7A 108 1.390 1bl0A 129 1.742 a.4.1.8,a.4.1.8 16053,16054 2qq9A 226 2.067 2v9vA 135 2.421 2gsqA 202 3.593 a.45.1.1,c.47.1.5 17715,33009 1xsvA 113 3.715 a.4.13.3 116003 2pg4A 95 6.114 1xcbA 211 6.808 a.4.5.38,c.2.1.12 109552,109553 2zfoC 147 6.835 1on2A 142 8.262 a.4.5.24,a.76.1.1 87103,87104 1tu7A 208 8.636 a.45.1.1,c.47.1.5 112653,112654 1sfxA 109 10.92 a.4.5.50 105505 1z5hA 780 13.63 1l3lA 234 15.06 a.4.6.2,d.110.5.1 73541,73542 1kz7A 353 15.48 a.87.1.1,b.55.1.1 73333,73334 1zljA 78 15.96 1je8A 82 16.31 a.4.6.2 77108 1y7yA 74 17.30 a.35.1.3 122729 2ahrA 259 18.14 a.100.1.10,c.2.1.6 126775,126776 2o09A 189 18.23 1fseA 74 18.75 a.4.6.2 60000 1resA 43 21.73 a.4.1.2 16023 1xo0A 324 21.90 a.60.9.1,d.163.1.1 115674,115675 1x9fA 151 22.44 a.1.1.2 114983 1wa5B 530 23.18 a.118.1.1 114432 1px5A 349 26.26 a.160.1.2,d.218.1.6 95277,95278 1yuzA 202 26.54 a.25.1.1,g.41.5.1 124077,124078 1y9qA 192 26.99 a.35.1.8,b.82.1.15 116592,116593 3cucA 291 27.10 2bnmA 198 28.95 a.35.1.3,b.82.1.10 128835,128836 1jlvA 209 29.53 a.45.1.1,c.47.1.5 71729,71730 2a2rA 210 29.94 a.45.1.1,c.47.1.5 126058,126059 1lrvA 244 30.09 a.118.1.5 19146 2graA 277 30.18 2ifuA 307 30.90 1lrv 244 31.10 2rfpA 171 31.28 1zy9A 564 31.72 b.30.5.11,c.1.8.13 125813,125814 1b6g 310 31.87 1m48A 133 33.46 a.26.1.2 74443 2d4zA 250 34.23 d.37.1.1,d.37.1.1 131260,131261 1x9fB 145 34.35 a.1.1.2 114984 1zcaA 359 35.76 a.66.1.1,c.37.1.8 124897,124898 1oe8A 211 36.23 a.45.1.1,c.47.1.5 86905,86906 2vg3A 284 36.63 1dlyA 164 37.69 a.1.1.1 14983 2d2mC 147 38.16 1nhyA 219 38.22 a.45.1.1,c.47.1.5 80520,80521 1b0nA 111 41.76 a.34.1.1,a.35.1.3 17001,17064 3cloA 258 42.15 1lbkA 208 43.34 a.45.1.1,c.47.1.5 73809,73810 2o8xA 70 43.81 1xqsA 280 44.06 a.118.1.21 122243 1jkoC 52 44.31 a.4.1.2 66809 2h09A 155 44.52 1lucA 355 44.54 c.1.16.1 29547 3co4A 312 46.30 1ouvA 273 46.47 a.118.18.1 93570 2dh2A 424 46.73 3b7hA 78 47.34 2dtrA 226 47.71 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1oywA 523 48.84 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1pgtA 210 48.95 a.45.1.1,c.47.1.5 17515,32809 1bw0A 416 49.17 c.67.1.1 34385 2b5aA 77 50.21 a.35.1.3 127882 1h4pA 408 51.46 c.1.8.3 90617 2de3A 365 51.62 1rzsA 61 51.82 a.35.1.2 105139 1n2aA 201 52.33 a.45.1.1,c.47.1.5 91553,91554 1k0dA 260 52.81 a.45.1.1,c.47.1.5 67930,67931 1owcA 427 54.55 a.103.1.1 104039 1m0uA 249 54.97 a.45.1.1,c.47.1.5 78359,78360 2hnlA 225 55.30 1s69A 124 57.52 a.1.1.1 105305 1utxA 66 59.57 a.35.1.3 108034 2fnaA 357 60.00 a.4.5.11,c.37.1.20 133809,133810 1s50A 259 60.56 c.94.1.1 118864 1g7oA 215 62.23 a.45.1.1,c.47.1.5 60332,60333 1sedA 117 63.02 a.219.1.1 105449 1a0pA 290 63.24 a.60.9.1,d.163.1.1 18105,42165 2blfA 373 63.55 1ho8A 480 64.79 a.118.1.9 61107 1k1xA 659 65.13 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1u8bA 133 67.02 3bqpA 80 67.28 2cx5A 158 68.07 1mkmA 249 68.39 a.4.5.33,d.110.2.2 79242,79243 1or4A 178 68.77 a.1.1.2 93447 3ddeA 239 71.52 2z0xA 158 72.00 1f1eA 154 74.56 a.22.1.2 64927 1ugpB 226 74.97 b.34.4.4 107832 1xqrA 296 76.98 a.118.1.21 122241 1lvaA 258 77.06 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2p18A 311 78.29 2ictA 94 79.04 1fx7A 230 81.57 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 3cuoA 99 82.97 1ua4A 455 83.04 c.72.1.3 99128 1xdyA 298 83.63 d.176.1.1 115186 1z9hA 290 84.82 a.45.1.1,c.47.1.5 124758,124759 1uarA 285 85.75 c.46.1.2,c.46.1.2 107762,107763 1a0fA 201 86.10 a.45.1.1,c.47.1.5 17737,33031 2pvqA 201 86.45 1g2hA 61 87.04 a.4.1.12 60224 1m12A 84 87.95 a.64.1.1 84745 1adrA 76 88.03 a.35.1.2 17042 1k3yA 221 88.69 a.45.1.1,c.47.1.5 77245,77246 3d1uA 288 88.80 1js1X 324 89.29 c.78.1.1,c.78.1.1 71834,71835 2ebyA 113 89.55 1yqgA 263 89.64