# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 1.20e-19 1vi0A 206 1.21e-19 a.4.1.9,a.121.1.1 100720,100721 2ibdA 204 3.09e-19 1jt6A 188 4.06e-19 a.4.1.9,a.121.1.1 67247,67248 1pb6A 212 4.74e-19 a.4.1.9,a.121.1.1 88017,88018 2uxuA 210 5.64e-19 1qvtA 194 6.40e-19 a.4.1.9,a.121.1.1 104602,104603 2hyjA 200 7.44e-19 3bruA 222 8.53e-19 2genA 197 9.07e-19 a.4.1.9,a.121.1.1 135062,135063 2f07A 197 1.05e-18 2qtqA 213 1.07e-18 3ccyA 203 1.13e-18 2g7sA 194 1.20e-18 a.4.1.9,a.121.1.1 134737,134738 1rktA 205 1.24e-18 a.4.1.9,a.121.1.1 97623,97624 1t56A 216 1.33e-18 a.4.1.9,a.121.1.1 106428,106429 3cdlA 203 1.77e-18 2fq4A 192 2.16e-18 a.4.1.9,a.121.1.1 133937,133938 2rasA 212 2.40e-18 3c2bA 221 2.87e-18 1z77A 200 3.78e-18 a.4.1.9,a.121.1.1 124588,124589 2zb9A 214 4.18e-18 3bhqA 211 4.38e-18 3bcgA 215 4.97e-18 1zkgA 212 5.33e-18 a.4.1.9,a.121.1.1 125194,125195 1ui5A 215 5.73e-18 a.4.1.9,a.121.1.1 107856,107857 3cjdA 198 5.89e-18 2iekA 200 6.08e-18 2nx4A 194 6.72e-18 3crjA 199 7.56e-18 2id6A 202 8.40e-18 2zcmA 192 9.55e-18 2raeA 207 1.02e-17 2gfnA 209 1.10e-17 a.4.1.9,a.121.1.1 135101,135102 2iaiA 230 1.21e-17 3cwrA 208 1.31e-17 2qcoA 210 1.59e-17 2id3A 225 1.59e-17 a.4.1.9,a.121.1.1 137261,137262 2i10A 202 1.62e-17 a.4.1.9,a.121.1.1 136960,136961 2hytA 197 2.29e-17 2dg7A 195 2.64e-17 2o7tA 199 4.42e-17 2jj7A 186 5.37e-17 2d6yA 202 6.74e-17 a.4.1.9,a.121.1.1 131313,131314 1sgmA 191 8.32e-17 a.4.1.9,a.121.1.1 105537,105538 3b81A 203 8.54e-17 2qkoA 215 1.01e-16 2tct 207 1.19e-16 1zk8A 183 1.32e-16 a.4.1.9,a.121.1.1 125177,125178 2qibA 231 1.48e-16 2np5A 203 1.78e-16 a.4.1.9,a.121.1.1 138424,138425 2g3bA 208 1.87e-16 a.4.1.9,a.121.1.1 134558,134559 3bqyA 209 2.42e-16 3colA 196 3.12e-16 2fbqA 235 3.59e-16 a.4.1.9,a.121.1.1 133256,133257 2optA 234 4.92e-16 2q24A 194 4.96e-16 2fx0A 201 5.20e-16 a.4.1.9,a.121.1.1 134269,134270 2rekA 199 6.07e-16 2hkuA 215 6.21e-16 2o7oA 207 7.11e-16 a.4.1.9,a.121.1.1 138930,138931 2of7A 260 7.65e-16 2fd5A 180 7.98e-16 a.4.1.9,a.121.1.1 133291,133292 1a6i 217 8.27e-16 3bjbA 207 8.54e-16 2g7gA 213 1.13e-15 a.4.1.9,a.121.1.1 134732,134733 3bniA 229 1.39e-15 2iu5A 195 1.40e-15 2vprA 207 1.47e-15 2vkeA 208 1.57e-15 2oerA 214 1.72e-15 1z0xA 220 2.80e-15 a.4.1.9,a.121.1.1 124334,124335 2oi8A 216 3.24e-15 2qwtA 196 3.66e-15 2dg8A 193 4.99e-15 2hxoA 237 6.91e-15 2eh3A 179 9.04e-15 2guhA 214 9.77e-15 1v7bA 185 1.18e-14 a.4.1.9,a.121.1.1 119861,119862 2yveA 185 2.01e-14 1t33A 224 8.50e-14 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 3.61e-13 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.4351 2dt5A 211 0.4650 a.4.5.38,c.2.1.12 131708,131709 1hlvA 131 0.5341 a.4.1.7,a.4.1.7 65854,65855 1wsuA 124 0.8429 a.4.5.35,a.4.5.35 121245,121246 1xcbA 211 1.576 a.4.5.38,c.2.1.12 109552,109553 2ev0A 142 1.638 a.4.5.24,a.76.1.1 132413,132414 1on2A 142 1.683 a.4.5.24,a.76.1.1 87103,87104 2rn7A 108 1.926 2pg4A 95 1.937 2qq9A 226 2.842 2v9vA 135 3.763 1xsvA 113 4.961 a.4.13.3 116003 1zljA 78 5.671 2bnmA 198 5.680 a.35.1.3,b.82.1.10 128835,128836 1sfxA 109 5.736 a.4.5.50 105505 1bl0A 129 6.017 a.4.1.8,a.4.1.8 16053,16054 1je8A 82 6.293 a.4.6.2 77108 1y7yA 74 6.419 a.35.1.3 122729 1fseA 74 6.426 a.4.6.2 60000 1y9qA 192 6.466 a.35.1.8,b.82.1.15 116592,116593 1b0nA 111 7.071 a.34.1.1,a.35.1.3 17001,17064 1l3lA 234 7.609 a.4.6.2,d.110.5.1 73541,73542 2ahrA 259 7.985 a.100.1.10,c.2.1.6 126775,126776 2h09A 155 8.402 2ifuA 307 8.608 2o3fA 111 9.771 3b7hA 78 10.28 2dtrA 226 11.22 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1utxA 66 12.49 a.35.1.3 108034 1ic8A 194 13.31 a.4.1.1,a.35.1.1 76740,76741 1jkoC 52 13.52 a.4.1.2 66809 1adrA 76 13.80 a.35.1.2 17042 1jgsA 138 14.13 a.4.5.28 66683 2r1jL 68 14.60 1lmb3 92 14.65 2b5aA 77 15.13 a.35.1.3 127882 2qwwA 154 15.43 2cro 71 15.89 1lvaA 258 16.81 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1u8bA 133 17.49 3bddA 142 17.69 1ypxA 375 17.94 1r69A 69 19.13 a.35.1.2 17028 2graA 277 19.28 1r69 69 19.61 3cloA 258 19.92 1x9fB 145 20.14 a.1.1.2 114984 2ictA 94 20.31 2croA 71 22.07 a.35.1.2 17038 1rzsA 61 23.31 a.35.1.2 105139 2ebyA 113 24.66 1xdyA 298 25.26 d.176.1.1 115186 2o8xA 70 27.06 2zfoC 147 27.10 1resA 43 27.30 a.4.1.2 16023 1ijbA 202 27.67 c.62.1.1 71229 3cuoA 99 28.07 1oe8A 211 28.64 a.45.1.1,c.47.1.5 86905,86906 2fjrA 189 29.34 2gsqA 202 29.66 a.45.1.1,c.47.1.5 17715,33009 3bs3A 76 30.17 1vz0A 230 30.67 a.4.14.1,d.268.1.1 108929,108930 2izzA 322 31.14 1yqgA 263 31.26 2nszA 129 32.61 a.118.1.14 138560 1neqA 74 32.78 a.35.1.2 17063 1aisB 200 32.79 a.74.1.2,a.74.1.2 18384,18385 1z91A 147 32.94 a.4.5.28 124736 2ah5A 210 33.72 c.108.1.6 126742 1a0pA 290 33.88 a.60.9.1,d.163.1.1 18105,42165 1jftA 340 34.54 a.35.1.5,c.93.1.1 66652,66653 1jhfA 202 34.63 a.4.5.2,b.87.1.1 63057,63058 2q0zX 339 35.05 1mkmA 249 35.35 a.4.5.33,d.110.2.2 79242,79243 2nyxA 168 36.69 2auwA 170 36.74 a.35.1.10,d.331.1.1 127339,127340 3bwgA 239 37.49 2cfxA 144 38.23 a.4.5.32,d.58.4.2 130395,130396 1s3jA 155 38.60 a.4.5.28 98437 2ia2A 265 39.04 1zcaA 359 40.50 a.66.1.1,c.37.1.8 124897,124898 2g7uA 257 42.56 2ofyA 86 42.63 3cecA 104 44.23 1fx7A 230 44.42 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1ji6A 589 45.00 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2d2mC 147 45.01 3bj6A 152 46.87 2cx5A 158 48.39 1tw3A 360 49.76 a.4.5.29,c.66.1.12 107373,107374 2nnnA 140 50.19 1bifA 469 51.56 c.37.1.7,c.60.1.4 31961,34003 2o0yA 260 51.56 2rcyA 262 52.06 2o09A 189 52.19 3c57A 95 52.52 2ppxA 99 52.79 1bw0A 416 53.44 c.67.1.1 34385 2dnxA 130 54.22 2blfA 373 54.25 1a0p 290 54.94 1owcA 427 55.35 a.103.1.1 104039 1wdvA 152 56.23 d.116.1.1 114539 1sedA 117 57.51 a.219.1.1 105449 2gxgA 146 58.39 2ondA 308 59.42 2ftsA 419 59.47 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 2ivmA 150 59.51 2dh2A 424 59.98 1r1uA 106 60.52 a.4.5.5 104771 2f4mB 61 61.20 a.189.1.1 132931 2qz8A 149 61.67 2ethA 154 63.19 a.4.5.28 132358 1lj9A 144 63.83 a.4.5.28 78035 1lrv 244 63.86 1r8eA 278 64.06 a.6.1.3,d.60.1.1 104843,104844 2h27A 73 64.23 a.4.13.2 135993 2zfoA 140 64.40 2dbbA 151 64.81 2d1hA 109 65.67 a.4.5.50 131125 2biiA 424 66.19 1jhgA 101 66.85 a.4.12.1 19009 1xo0A 324 66.99 a.60.9.1,d.163.1.1 115674,115675 2q0oA 236 67.80 3bpvA 138 68.22 2d4zA 250 69.51 d.37.1.1,d.37.1.1 131260,131261 1yuzA 202 70.89 a.25.1.1,g.41.5.1 124077,124078 1lrvA 244 72.09 a.118.1.5 19146 2fnaA 357 72.40 a.4.5.11,c.37.1.20 133809,133810 2nrlA 147 72.80 3d1uA 288 73.58 1auiB 169 73.81 a.39.1.5 17325 2rdpA 150 73.87 1j5yA 187 76.85 a.4.5.1,d.94.2.1 71592,71593 1atzA 189 77.67 c.62.1.1 34132 1g7oA 215 77.98 a.45.1.1,c.47.1.5 60332,60333 1zy9A 564 79.35 b.30.5.11,c.1.8.13 125813,125814 1wzdA 215 79.35 a.132.1.1 121493 2a2rA 210 79.38 a.45.1.1,c.47.1.5 126058,126059 3bujA 397 79.53 1s69A 124 80.03 a.1.1.1 105305 1ub9A 100 81.16 a.4.5.28 99159 2zfdA 226 82.17 3czdA 315 82.80 2q4uA 272 85.43 3ciwA 348 85.79 1z5hA 780 86.10 1no5A 114 86.35 d.218.1.5 92014 1wa5B 530 88.06 a.118.1.1 114432 2z0xA 158 89.16 1v2aA 210 89.28 a.45.1.1,c.47.1.5 100263,100264 2hnlA 225 89.67 1js3A 486 89.85 c.67.1.6 67215