# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 6.77e-23 a.4.1.9,a.121.1.1 100720,100721 1jt6A 188 1.65e-22 a.4.1.9,a.121.1.1 67247,67248 2pbxA 203 1.67e-22 1qvtA 194 1.92e-22 a.4.1.9,a.121.1.1 104602,104603 2uxuA 210 5.32e-22 2hyjA 200 5.35e-22 3ccyA 203 5.66e-22 1rktA 205 5.99e-22 a.4.1.9,a.121.1.1 97623,97624 2ibdA 204 9.38e-22 1t56A 216 1.63e-21 a.4.1.9,a.121.1.1 106428,106429 2g7sA 194 2.17e-21 a.4.1.9,a.121.1.1 134737,134738 1pb6A 212 2.80e-21 a.4.1.9,a.121.1.1 88017,88018 3bruA 222 2.90e-21 2f07A 197 3.07e-21 1z77A 200 4.09e-21 a.4.1.9,a.121.1.1 124588,124589 3c2bA 221 4.20e-21 3crjA 199 4.74e-21 2qtqA 213 5.10e-21 3bhqA 211 5.23e-21 3cdlA 203 5.43e-21 2fq4A 192 5.47e-21 a.4.1.9,a.121.1.1 133937,133938 1zkgA 212 5.67e-21 a.4.1.9,a.121.1.1 125194,125195 2iekA 200 7.55e-21 2id6A 202 9.44e-21 2qcoA 210 9.77e-21 2genA 197 9.84e-21 a.4.1.9,a.121.1.1 135062,135063 2rasA 212 1.22e-20 2nx4A 194 1.54e-20 2raeA 207 1.58e-20 3bcgA 215 1.71e-20 1ui5A 215 1.85e-20 a.4.1.9,a.121.1.1 107856,107857 2zb9A 214 2.79e-20 2o7tA 199 3.26e-20 2zcmA 192 3.27e-20 3cwrA 208 3.35e-20 2hytA 197 3.58e-20 2gfnA 209 6.54e-20 a.4.1.9,a.121.1.1 135101,135102 2dg7A 195 7.93e-20 2id3A 225 9.09e-20 a.4.1.9,a.121.1.1 137261,137262 1sgmA 191 9.25e-20 a.4.1.9,a.121.1.1 105537,105538 2iaiA 230 1.04e-19 2qkoA 215 1.19e-19 3cjdA 198 1.84e-19 2g3bA 208 2.04e-19 a.4.1.9,a.121.1.1 134558,134559 2jj7A 186 2.18e-19 2tct 207 2.43e-19 2np5A 203 2.84e-19 a.4.1.9,a.121.1.1 138424,138425 2d6yA 202 2.93e-19 a.4.1.9,a.121.1.1 131313,131314 1zk8A 183 3.89e-19 a.4.1.9,a.121.1.1 125177,125178 3b81A 203 3.98e-19 2qibA 231 4.25e-19 2i10A 202 4.65e-19 a.4.1.9,a.121.1.1 136960,136961 2optA 234 8.12e-19 2of7A 260 9.65e-19 3colA 196 1.08e-18 2rekA 199 1.23e-18 2fd5A 180 1.28e-18 a.4.1.9,a.121.1.1 133291,133292 2fbqA 235 1.90e-18 a.4.1.9,a.121.1.1 133256,133257 3bniA 229 1.91e-18 3bqyA 209 2.25e-18 2hkuA 215 2.34e-18 2iu5A 195 2.66e-18 2q24A 194 2.68e-18 2o7oA 207 2.84e-18 a.4.1.9,a.121.1.1 138930,138931 2fx0A 201 2.96e-18 a.4.1.9,a.121.1.1 134269,134270 3bjbA 207 3.35e-18 2g7gA 213 3.66e-18 a.4.1.9,a.121.1.1 134732,134733 2vkeA 208 3.94e-18 2oi8A 216 6.16e-18 1a6i 217 7.23e-18 2oerA 214 1.09e-17 2dg8A 193 1.38e-17 2eh3A 179 1.47e-17 2hxoA 237 2.47e-17 2vprA 207 2.56e-17 1z0xA 220 3.08e-17 a.4.1.9,a.121.1.1 124334,124335 2qwtA 196 3.10e-17 1v7bA 185 3.42e-17 a.4.1.9,a.121.1.1 119861,119862 2yveA 185 3.87e-17 2guhA 214 4.49e-17 1t33A 224 1.25e-16 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 7.85e-15 a.4.1.9,a.121.1.1 134734,134735 1hlvA 131 0.6180 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 0.9631 2v9vA 135 1.158 2ev0A 142 1.674 a.4.5.24,a.76.1.1 132413,132414 2dt5A 211 1.766 a.4.5.38,c.2.1.12 131708,131709 2qq9A 226 2.524 1bl0A 129 3.036 a.4.1.8,a.4.1.8 16053,16054 1wsuA 124 3.202 a.4.5.35,a.4.5.35 121245,121246 1z5hA 780 4.179 2gsqA 202 4.472 a.45.1.1,c.47.1.5 17715,33009 2pg4A 95 6.234 2rn7A 108 8.841 1xsvA 113 9.218 a.4.13.3 116003 1s69A 124 9.842 a.1.1.1 105305 1xcbA 211 11.01 a.4.5.38,c.2.1.12 109552,109553 1x9fB 145 11.17 a.1.1.2 114984 3ddeA 239 11.69 2ondA 308 12.52 1on2A 142 12.98 a.4.5.24,a.76.1.1 87103,87104 1pq1A 196 13.20 f.1.4.1 94986 1kz7A 353 14.13 a.87.1.1,b.55.1.1 73333,73334 1sfxA 109 15.48 a.4.5.50 105505 2zfoC 147 16.00 1fseA 74 16.04 a.4.6.2 60000 1dlyA 164 16.41 a.1.1.1 14983 1lmb3 92 17.29 2nszA 129 17.42 a.118.1.14 138560 2ahrA 259 18.28 a.100.1.10,c.2.1.6 126775,126776 1tu7A 208 18.44 a.45.1.1,c.47.1.5 112653,112654 1ee4A 423 18.83 a.118.1.1 19128 1lbkA 208 19.20 a.45.1.1,c.47.1.5 73809,73810 1a0pA 290 19.37 a.60.9.1,d.163.1.1 18105,42165 1y7yA 74 20.53 a.35.1.3 122729 3co4A 312 20.60 1x9fA 151 20.78 a.1.1.2 114983 1zy9A 564 21.16 b.30.5.11,c.1.8.13 125813,125814 1u8bA 133 23.23 2a2rA 210 23.35 a.45.1.1,c.47.1.5 126058,126059 2ifuA 307 23.39 1l3lA 234 23.65 a.4.6.2,d.110.5.1 73541,73542 1zljA 78 24.59 2fnaA 357 25.80 a.4.5.11,c.37.1.20 133809,133810 2btzA 394 26.87 2ho1A 252 27.00 1v2aA 210 27.13 a.45.1.1,c.47.1.5 100263,100264 2qguA 211 27.16 1xo0A 324 27.61 a.60.9.1,d.163.1.1 115674,115675 1b0nA 111 27.63 a.34.1.1,a.35.1.3 17001,17064 1zcaA 359 28.74 a.66.1.1,c.37.1.8 124897,124898 2o8xA 70 29.65 1munA 225 29.70 a.96.1.2 18744 1je8A 82 30.31 a.4.6.2 77108 2c1mA 424 33.44 1xqsA 280 33.92 a.118.1.21 122243 1y9qA 192 34.30 a.35.1.8,b.82.1.15 116592,116593 2dnxA 130 35.59 1utxA 66 36.58 a.35.1.3 108034 1oe8A 211 37.18 a.45.1.1,c.47.1.5 86905,86906 2o09A 189 38.27 1u61A 138 38.57 a.149.1.1 107696 2a2mA 258 39.11 a.132.1.3 126039 1jlvA 209 39.27 a.45.1.1,c.47.1.5 71729,71730 2cx5A 158 39.64 2bnmA 198 41.44 a.35.1.3,b.82.1.10 128835,128836 1yhuB 144 41.74 1resA 43 42.11 a.4.1.2 16023 2ictA 94 42.77 1a0p 290 43.14 1ngkA 128 43.21 a.1.1.1 85673 1jdhA 529 43.24 a.118.1.1 66549 1lucA 355 44.28 c.1.16.1 29547 1mkmA 249 44.77 a.4.5.33,d.110.2.2 79242,79243 2bk9A 153 46.87 2ieeA 271 47.14 1yqgA 263 47.73 2b5aA 77 48.56 a.35.1.3 127882 2dtrA 226 49.77 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2ftsA 419 49.83 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1qbkB 890 50.65 a.118.1.1 19127 2de3A 365 50.99 2z0xA 158 52.23 1nhyA 219 52.70 a.45.1.1,c.47.1.5 80520,80521 1wdvA 152 53.50 d.116.1.1 114539 1wa5B 530 53.59 a.118.1.1 114432 1px5A 349 54.04 a.160.1.2,d.218.1.6 95277,95278 2imsA 171 54.79 1lrvA 244 54.88 a.118.1.5 19146 2o3fA 111 55.61 1m0uA 249 58.15 a.45.1.1,c.47.1.5 78359,78360 1jftA 340 58.26 a.35.1.5,c.93.1.1 66652,66653 2pzzA 147 61.93 3b7hA 78 62.30 2ii2A 310 64.42 1ji6A 589 65.28 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2pbyA 308 65.33 2g0dA 409 65.76 2q4uA 272 65.93 1oywA 523 66.02 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2dh2A 424 66.22 1k3yA 221 66.25 a.45.1.1,c.47.1.5 77245,77246 1ho8A 480 68.31 a.118.1.9 61107 3ct5A 159 70.42 1rzsA 61 70.57 a.35.1.2 105139 1f1eA 154 70.76 a.22.1.2 64927 1s50A 259 71.23 c.94.1.1 118864 3bjdA 332 71.91 1ua4A 455 71.99 c.72.1.3 99128 2d2mC 147 72.46 1unlD 208 72.54 a.74.1.1 113326 1ne7A 289 72.79 c.124.1.1 91833 2v1xA 591 74.80 2h27A 73 75.15 a.4.13.2 135993 2e0aA 394 75.46 2f4mB 61 75.85 a.189.1.1 132931 2c78A 405 77.22 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1kgnA 329 79.00 a.25.1.2 68584 2pvuA 272 80.21 1ouvA 273 80.90 a.118.18.1 93570 2q0zX 339 81.27 2ihdA 155 81.45 2izzA 322 82.89 1ntyA 311 83.25 a.87.1.1,b.55.1.1 103873,103874 1wd6A 123 83.78 d.58.4.12 114525 3cs1A 219 84.06 1g2hA 61 84.89 a.4.1.12 60224 1b6g 310 85.11 2graA 277 85.13 2qw5A 335 86.61 2qwwA 154 88.64 1u2xA 474 89.00 c.72.1.3 107622 1xnfA 275 89.21 a.118.8.1 115580