# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 4.69e-23 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 1.02e-22 1jt6A 188 1.32e-22 a.4.1.9,a.121.1.1 67247,67248 1qvtA 194 1.57e-22 a.4.1.9,a.121.1.1 104602,104603 2uxuA 210 2.34e-22 2hyjA 200 3.10e-22 3ccyA 203 3.31e-22 1rktA 205 4.21e-22 a.4.1.9,a.121.1.1 97623,97624 2ibdA 204 6.39e-22 1t56A 216 7.25e-22 a.4.1.9,a.121.1.1 106428,106429 2f07A 197 1.20e-21 2g7sA 194 1.33e-21 a.4.1.9,a.121.1.1 134737,134738 1pb6A 212 1.33e-21 a.4.1.9,a.121.1.1 88017,88018 3bruA 222 1.64e-21 3c2bA 221 2.41e-21 2qtqA 213 2.63e-21 2fq4A 192 2.64e-21 a.4.1.9,a.121.1.1 133937,133938 1z77A 200 2.66e-21 a.4.1.9,a.121.1.1 124588,124589 3bhqA 211 2.70e-21 3crjA 199 2.99e-21 1zkgA 212 3.55e-21 a.4.1.9,a.121.1.1 125194,125195 2genA 197 3.87e-21 a.4.1.9,a.121.1.1 135062,135063 3cdlA 203 4.20e-21 2iekA 200 4.42e-21 3bcgA 215 6.18e-21 2id6A 202 6.58e-21 2qcoA 210 7.08e-21 2rasA 212 7.69e-21 2raeA 207 9.85e-21 2nx4A 194 1.04e-20 1ui5A 215 1.06e-20 a.4.1.9,a.121.1.1 107856,107857 3cwrA 208 1.37e-20 2zb9A 214 1.99e-20 2hytA 197 2.00e-20 2zcmA 192 2.06e-20 2o7tA 199 2.41e-20 2gfnA 209 3.90e-20 a.4.1.9,a.121.1.1 135101,135102 2dg7A 195 4.16e-20 1sgmA 191 4.21e-20 a.4.1.9,a.121.1.1 105537,105538 2id3A 225 4.96e-20 a.4.1.9,a.121.1.1 137261,137262 2qkoA 215 5.71e-20 2iaiA 230 6.26e-20 2g3bA 208 9.98e-20 a.4.1.9,a.121.1.1 134558,134559 3cjdA 198 1.17e-19 2tct 207 1.27e-19 2jj7A 186 1.32e-19 2np5A 203 1.54e-19 a.4.1.9,a.121.1.1 138424,138425 2d6yA 202 1.89e-19 a.4.1.9,a.121.1.1 131313,131314 2qibA 231 2.25e-19 1zk8A 183 2.44e-19 a.4.1.9,a.121.1.1 125177,125178 2i10A 202 2.67e-19 a.4.1.9,a.121.1.1 136960,136961 3b81A 203 3.13e-19 2optA 234 3.56e-19 3colA 196 5.72e-19 2of7A 260 6.47e-19 2fd5A 180 7.29e-19 a.4.1.9,a.121.1.1 133291,133292 3bqyA 209 1.05e-18 2iu5A 195 1.06e-18 3bniA 229 1.20e-18 2rekA 199 1.30e-18 2hkuA 215 1.45e-18 2fbqA 235 1.45e-18 a.4.1.9,a.121.1.1 133256,133257 2o7oA 207 1.56e-18 a.4.1.9,a.121.1.1 138930,138931 3bjbA 207 1.80e-18 2q24A 194 2.07e-18 2fx0A 201 2.09e-18 a.4.1.9,a.121.1.1 134269,134270 2vkeA 208 2.16e-18 2g7gA 213 2.25e-18 a.4.1.9,a.121.1.1 134732,134733 1a6i 217 3.32e-18 2oi8A 216 5.29e-18 2oerA 214 6.00e-18 2dg8A 193 7.93e-18 2vprA 207 1.01e-17 2eh3A 179 1.06e-17 1z0xA 220 1.30e-17 a.4.1.9,a.121.1.1 124334,124335 2hxoA 237 1.31e-17 1v7bA 185 2.38e-17 a.4.1.9,a.121.1.1 119861,119862 2qwtA 196 2.40e-17 2yveA 185 2.61e-17 2guhA 214 3.25e-17 1t33A 224 1.65e-16 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 5.80e-15 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.6548 1hlvA 131 0.6724 a.4.1.7,a.4.1.7 65854,65855 2ev0A 142 0.9047 a.4.5.24,a.76.1.1 132413,132414 2dt5A 211 1.242 a.4.5.38,c.2.1.12 131708,131709 2v9vA 135 1.275 2qq9A 226 2.161 1wsuA 124 2.616 a.4.5.35,a.4.5.35 121245,121246 1bl0A 129 2.672 a.4.1.8,a.4.1.8 16053,16054 2pg4A 95 5.417 2rn7A 108 5.432 1z5hA 780 5.695 1xsvA 113 5.944 a.4.13.3 116003 2gsqA 202 7.049 a.45.1.1,c.47.1.5 17715,33009 1on2A 142 7.487 a.4.5.24,a.76.1.1 87103,87104 1xcbA 211 9.053 a.4.5.38,c.2.1.12 109552,109553 2ondA 308 10.43 1pq1A 196 10.90 f.1.4.1 94986 1s69A 124 11.34 a.1.1.1 105305 1fseA 74 11.91 a.4.6.2 60000 1kz7A 353 12.50 a.87.1.1,b.55.1.1 73333,73334 1sfxA 109 12.74 a.4.5.50 105505 1dlyA 164 15.05 a.1.1.1 14983 2ahrA 259 15.35 a.100.1.10,c.2.1.6 126775,126776 1lmb3 92 15.76 1zy9A 564 15.93 b.30.5.11,c.1.8.13 125813,125814 1tu7A 208 16.80 a.45.1.1,c.47.1.5 112653,112654 1l3lA 234 16.90 a.4.6.2,d.110.5.1 73541,73542 1b0nA 111 18.48 a.34.1.1,a.35.1.3 17001,17064 1zljA 78 18.73 1u8bA 133 19.17 1ee4A 423 20.34 a.118.1.1 19128 2o8xA 70 20.41 1je8A 82 20.53 a.4.6.2 77108 1munA 225 20.75 a.96.1.2 18744 1y7yA 74 21.17 a.35.1.3 122729 3ddeA 239 21.18 2nszA 129 21.35 a.118.1.14 138560 2btzA 394 22.12 1a0pA 290 22.69 a.60.9.1,d.163.1.1 18105,42165 2qguA 211 23.31 2o09A 189 23.31 1x9fB 145 23.93 a.1.1.2 114984 2dnxA 130 24.21 1lbkA 208 24.42 a.45.1.1,c.47.1.5 73809,73810 1xo0A 324 25.10 a.60.9.1,d.163.1.1 115674,115675 2a2rA 210 26.10 a.45.1.1,c.47.1.5 126058,126059 2fnaA 357 27.17 a.4.5.11,c.37.1.20 133809,133810 1zcaA 359 27.65 a.66.1.1,c.37.1.8 124897,124898 3co4A 312 28.30 2ictA 94 28.85 1jlvA 209 28.92 a.45.1.1,c.47.1.5 71729,71730 1utxA 66 29.09 a.35.1.3 108034 2ho1A 252 29.29 1v2aA 210 31.23 a.45.1.1,c.47.1.5 100263,100264 2c1mA 424 31.86 1yqgA 263 32.59 2ieeA 271 33.21 1ngkA 128 34.18 a.1.1.1 85673 2zfoC 147 34.73 2cx5A 158 35.19 1y9qA 192 36.38 a.35.1.8,b.82.1.15 116592,116593 1resA 43 36.56 a.4.1.2 16023 2dtrA 226 37.12 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2b5aA 77 38.60 a.35.1.3 127882 2ifuA 307 39.34 1nhyA 219 39.65 a.45.1.1,c.47.1.5 80520,80521 1jdhA 529 40.51 a.118.1.1 66549 1mkmA 249 41.64 a.4.5.33,d.110.2.2 79242,79243 2ftsA 419 41.73 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 2bnmA 198 41.95 a.35.1.3,b.82.1.10 128835,128836 2z0xA 158 42.18 1qbkB 890 42.96 a.118.1.1 19127 1lrvA 244 43.65 a.118.1.5 19146 2o3fA 111 44.33 2qwwA 154 44.48 2bk9A 153 44.64 1yhuB 144 45.10 1ntyA 311 45.42 a.87.1.1,b.55.1.1 103873,103874 2a2mA 258 46.04 a.132.1.3 126039 2h27A 73 46.06 a.4.13.2 135993 2imsA 171 47.02 1wdvA 152 48.02 d.116.1.1 114539 1rzsA 61 48.53 a.35.1.2 105139 1jftA 340 49.42 a.35.1.5,c.93.1.1 66652,66653 1oe8A 211 49.95 a.45.1.1,c.47.1.5 86905,86906 1lucA 355 50.50 c.1.16.1 29547 1x9fA 151 50.77 a.1.1.2 114983 2ah5A 210 51.05 c.108.1.6 126742 1a0p 290 51.53 1u61A 138 52.68 a.149.1.1 107696 3b7hA 78 53.08 2dh2A 424 53.73 1xqsA 280 55.24 a.118.1.21 122243 2ii2A 310 57.11 1e6cA 173 57.21 c.37.1.2 59296 1b6g 310 59.37 2de3A 365 61.10 2ihdA 155 61.23 1f1eA 154 63.88 a.22.1.2 64927 1adrA 76 63.89 a.35.1.2 17042 1s50A 259 66.91 c.94.1.1 118864 2r1jL 68 66.92 1px5A 349 66.96 a.160.1.2,d.218.1.6 95277,95278 3d1uA 288 67.39 3bjdA 332 68.00 3cuoA 99 68.08 1m0uA 249 68.11 a.45.1.1,c.47.1.5 78359,78360 3cucA 291 68.78 2f4mB 61 69.86 a.189.1.1 132931 1vz0A 230 70.29 a.4.14.1,d.268.1.1 108929,108930 2rfpA 171 72.48 1ua4A 455 72.90 c.72.1.3 99128 1unlD 208 73.05 a.74.1.1 113326 1wa5B 530 73.14 a.118.1.1 114432 2pvuA 272 73.54 1oywA 523 74.43 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1g2hA 61 74.62 a.4.1.12 60224 1kgnA 329 75.76 a.25.1.2 68584 1yuzA 202 76.74 a.25.1.1,g.41.5.1 124077,124078 2izzA 322 77.89 1or4A 178 79.31 a.1.1.2 93447 2exrA 524 79.67 1k3yA 221 80.01 a.45.1.1,c.47.1.5 77245,77246 2g0dA 409 80.36 1ukz 203 81.95 1uhkA 191 83.32 a.39.1.5 119681 2e60A 101 85.16 1z91A 147 85.43 a.4.5.28 124736 1r69A 69 87.51 a.35.1.2 17028 2blfA 373 87.70 2q0zX 339 88.11 2p65A 187 89.16 3bs3A 76 89.17 2e0aA 394 89.27 1r69 69 89.46