# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 4.93e-23 a.4.1.9,a.121.1.1 100720,100721 1jt6A 188 1.02e-22 a.4.1.9,a.121.1.1 67247,67248 1qvtA 194 1.08e-22 a.4.1.9,a.121.1.1 104602,104603 2pbxA 203 1.10e-22 2uxuA 210 2.74e-22 3ccyA 203 2.99e-22 2hyjA 200 3.58e-22 1rktA 205 4.20e-22 a.4.1.9,a.121.1.1 97623,97624 2ibdA 204 7.55e-22 1t56A 216 1.10e-21 a.4.1.9,a.121.1.1 106428,106429 2f07A 197 1.60e-21 2g7sA 194 1.75e-21 a.4.1.9,a.121.1.1 134737,134738 3c2bA 221 2.28e-21 3bruA 222 2.28e-21 1pb6A 212 2.38e-21 a.4.1.9,a.121.1.1 88017,88018 1z77A 200 3.01e-21 a.4.1.9,a.121.1.1 124588,124589 1zkgA 212 3.05e-21 a.4.1.9,a.121.1.1 125194,125195 3crjA 199 3.35e-21 2fq4A 192 3.59e-21 a.4.1.9,a.121.1.1 133937,133938 3cdlA 203 3.71e-21 3bhqA 211 4.12e-21 2qtqA 213 4.35e-21 2iekA 200 4.86e-21 2qcoA 210 6.18e-21 2id6A 202 6.91e-21 2genA 197 8.53e-21 a.4.1.9,a.121.1.1 135062,135063 2raeA 207 1.05e-20 2rasA 212 1.06e-20 2nx4A 194 1.08e-20 3bcgA 215 1.12e-20 1ui5A 215 1.24e-20 a.4.1.9,a.121.1.1 107856,107857 2zb9A 214 1.86e-20 2zcmA 192 1.87e-20 2o7tA 199 2.04e-20 3cwrA 208 2.50e-20 2hytA 197 2.65e-20 2gfnA 209 3.01e-20 a.4.1.9,a.121.1.1 135101,135102 2dg7A 195 4.54e-20 2qkoA 215 5.67e-20 2iaiA 230 6.11e-20 2id3A 225 6.87e-20 a.4.1.9,a.121.1.1 137261,137262 1sgmA 191 7.48e-20 a.4.1.9,a.121.1.1 105537,105538 2g3bA 208 1.07e-19 a.4.1.9,a.121.1.1 134558,134559 2np5A 203 1.30e-19 a.4.1.9,a.121.1.1 138424,138425 3cjdA 198 1.52e-19 2tct 207 1.77e-19 2jj7A 186 1.98e-19 2d6yA 202 2.37e-19 a.4.1.9,a.121.1.1 131313,131314 3b81A 203 2.44e-19 2i10A 202 2.47e-19 a.4.1.9,a.121.1.1 136960,136961 2qibA 231 2.53e-19 1zk8A 183 3.11e-19 a.4.1.9,a.121.1.1 125177,125178 2optA 234 4.39e-19 2of7A 260 6.42e-19 3colA 196 9.15e-19 2rekA 199 9.21e-19 2fd5A 180 1.17e-18 a.4.1.9,a.121.1.1 133291,133292 2iu5A 195 1.67e-18 2fbqA 235 1.83e-18 a.4.1.9,a.121.1.1 133256,133257 3bniA 229 1.84e-18 3bqyA 209 1.96e-18 2hkuA 215 1.99e-18 2q24A 194 2.48e-18 2g7gA 213 2.48e-18 a.4.1.9,a.121.1.1 134732,134733 2fx0A 201 2.49e-18 a.4.1.9,a.121.1.1 134269,134270 2o7oA 207 2.65e-18 a.4.1.9,a.121.1.1 138930,138931 3bjbA 207 2.77e-18 2vkeA 208 2.92e-18 1a6i 217 5.00e-18 2oi8A 216 7.59e-18 2dg8A 193 8.56e-18 2oerA 214 8.92e-18 2eh3A 179 1.12e-17 1z0xA 220 1.46e-17 a.4.1.9,a.121.1.1 124334,124335 2hxoA 237 1.55e-17 2vprA 207 1.57e-17 2qwtA 196 2.79e-17 1v7bA 185 2.89e-17 a.4.1.9,a.121.1.1 119861,119862 2yveA 185 3.14e-17 2guhA 214 4.03e-17 1t33A 224 9.00e-17 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 6.63e-15 a.4.1.9,a.121.1.1 134734,134735 1hlvA 131 0.7642 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 1.057 2dt5A 211 1.973 a.4.5.38,c.2.1.12 131708,131709 2ev0A 142 2.157 a.4.5.24,a.76.1.1 132413,132414 2v9vA 135 2.438 2qq9A 226 3.079 1bl0A 129 4.100 a.4.1.8,a.4.1.8 16053,16054 1wsuA 124 4.731 a.4.5.35,a.4.5.35 121245,121246 2pg4A 95 6.460 2gsqA 202 6.616 a.45.1.1,c.47.1.5 17715,33009 1z5hA 780 7.607 1xsvA 113 10.18 a.4.13.3 116003 1dlyA 164 10.67 a.1.1.1 14983 1s69A 124 10.80 a.1.1.1 105305 2rn7A 108 10.91 2ondA 308 11.23 1xcbA 211 11.81 a.4.5.38,c.2.1.12 109552,109553 1zy9A 564 13.42 b.30.5.11,c.1.8.13 125813,125814 1fseA 74 16.46 a.4.6.2 60000 2btzA 394 16.52 3co4A 312 16.62 1x9fB 145 16.85 a.1.1.2 114984 1a0pA 290 17.82 a.60.9.1,d.163.1.1 18105,42165 1lmb3 92 18.56 2ahrA 259 19.21 a.100.1.10,c.2.1.6 126775,126776 1ngkA 128 19.62 a.1.1.1 85673 1kz7A 353 20.99 a.87.1.1,b.55.1.1 73333,73334 1pq1A 196 21.31 f.1.4.1 94986 2qguA 211 21.35 2ifuA 307 21.62 1x9fA 151 21.91 a.1.1.2 114983 1xo0A 324 22.06 a.60.9.1,d.163.1.1 115674,115675 2dh2A 424 22.08 1on2A 142 22.20 a.4.5.24,a.76.1.1 87103,87104 1zcaA 359 22.57 a.66.1.1,c.37.1.8 124897,124898 2zfoC 147 23.26 1sfxA 109 23.43 a.4.5.50 105505 1l3lA 234 23.88 a.4.6.2,d.110.5.1 73541,73542 1tu7A 208 24.16 a.45.1.1,c.47.1.5 112653,112654 1y7yA 74 24.99 a.35.1.3 122729 1zljA 78 25.67 1munA 225 25.95 a.96.1.2 18744 1je8A 82 26.51 a.4.6.2 77108 3ddeA 239 27.54 1lbkA 208 27.57 a.45.1.1,c.47.1.5 73809,73810 2fnaA 357 27.80 a.4.5.11,c.37.1.20 133809,133810 1b0nA 111 28.12 a.34.1.1,a.35.1.3 17001,17064 1u8bA 133 28.29 2ftsA 419 28.73 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 2nszA 129 29.53 a.118.1.14 138560 2c1mA 424 30.21 1ee4A 423 30.28 a.118.1.1 19128 2dnxA 130 30.29 1v2aA 210 30.85 a.45.1.1,c.47.1.5 100263,100264 2ho1A 252 31.13 2o8xA 70 31.54 1ji6A 589 33.02 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2a2mA 258 36.75 a.132.1.3 126039 2a2rA 210 37.02 a.45.1.1,c.47.1.5 126058,126059 2o09A 189 37.30 2bk9A 153 37.45 1lrvA 244 37.82 a.118.1.5 19146 1lucA 355 38.69 c.1.16.1 29547 1jlvA 209 39.69 a.45.1.1,c.47.1.5 71729,71730 1utxA 66 40.03 a.35.1.3 108034 1jftA 340 40.34 a.35.1.5,c.93.1.1 66652,66653 1a0p 290 40.81 1y9qA 192 41.39 a.35.1.8,b.82.1.15 116592,116593 1oe8A 211 41.84 a.45.1.1,c.47.1.5 86905,86906 1xqsA 280 42.83 a.118.1.21 122243 1qbkB 890 45.15 a.118.1.1 19127 1yqgA 263 45.27 1vflA 356 46.69 c.1.9.1 120041 1b6g 310 46.76 2ah5A 210 48.59 c.108.1.6 126742 1mkmA 249 49.40 a.4.5.33,d.110.2.2 79242,79243 2cx5A 158 49.82 1u61A 138 50.33 a.149.1.1 107696 1unlD 208 52.43 a.74.1.1 113326 2b5aA 77 52.56 a.35.1.3 127882 2z0xA 158 53.43 2ictA 94 53.62 1nhyA 219 54.39 a.45.1.1,c.47.1.5 80520,80521 2bnmA 198 55.15 a.35.1.3,b.82.1.10 128835,128836 2ieeA 271 56.02 2e0aA 394 56.86 1e6cA 173 59.08 c.37.1.2 59296 1yhuB 144 60.69 2o3fA 111 60.97 1px5A 349 61.05 a.160.1.2,d.218.1.6 95277,95278 1k3yA 221 61.13 a.45.1.1,c.47.1.5 77245,77246 2exrA 524 61.63 1wdvA 152 62.93 d.116.1.1 114539 1m0uA 249 63.09 a.45.1.1,c.47.1.5 78359,78360 1ntyA 311 63.88 a.87.1.1,b.55.1.1 103873,103874 2dtrA 226 64.10 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2vosA 487 64.13 1rzsA 61 66.18 a.35.1.2 105139 1ny1A 240 66.36 c.6.2.3 86395 2ihdA 155 67.11 1ho8A 480 67.75 a.118.1.9 61107 2avnA 260 67.78 c.66.1.41 127380 1jdhA 529 69.31 a.118.1.1 66549 1resA 43 70.53 a.4.1.2 16023 2h27A 73 72.17 a.4.13.2 135993 1kgnA 329 72.50 a.25.1.2 68584 1oywA 523 72.84 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 3bjdA 332 73.13 2d1zA 436 74.30 2de3A 365 75.24 1wa5B 530 75.78 a.118.1.1 114432 2r1jL 68 75.91 2rfpA 171 76.05 1lrv 244 76.20 2imsA 171 77.20 2ii2A 310 77.55 2c78A 405 77.62 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1dlwA 116 77.98 a.1.1.1 14982 3b8dA 363 80.90 2qwwA 154 82.73 2q4uA 272 85.62 2blfA 373 87.31 1ouvA 273 88.16 a.118.18.1 93570 3b7hA 78 89.30 1ne7A 289 89.71 c.124.1.1 91833