# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vi0A	206	3.54e-19	a.4.1.9,a.121.1.1	100720,100721
2qtqA	213	6.73e-19		
2pbxA	203	6.77e-19		
2f07A	197	9.10e-19		
2uxuA	210	9.28e-19		
2hyjA	200	1.24e-18		
2ibdA	204	1.27e-18		
2genA	197	1.93e-18	a.4.1.9,a.121.1.1	135062,135063
1qvtA	194	2.42e-18	a.4.1.9,a.121.1.1	104602,104603
3bruA	222	2.56e-18		
1t56A	216	2.64e-18	a.4.1.9,a.121.1.1	106428,106429
1jt6A	188	2.82e-18	a.4.1.9,a.121.1.1	67247,67248
1pb6A	212	2.83e-18	a.4.1.9,a.121.1.1	88017,88018
3cdlA	203	3.69e-18		
3ccyA	203	3.70e-18		
2g7sA	194	7.26e-18	a.4.1.9,a.121.1.1	134737,134738
2fq4A	192	8.59e-18	a.4.1.9,a.121.1.1	133937,133938
3crjA	199	8.85e-18		
2rasA	212	9.87e-18		
3bcgA	215	1.13e-17		
2iaiA	230	1.48e-17		
3c2bA	221	1.54e-17		
3bhqA	211	1.65e-17		
1z77A	200	1.79e-17	a.4.1.9,a.121.1.1	124588,124589
1rktA	205	1.94e-17	a.4.1.9,a.121.1.1	97623,97624
1zkgA	212	1.98e-17	a.4.1.9,a.121.1.1	125194,125195
2nx4A	194	2.02e-17		
3cjdA	198	2.22e-17		
2dg7A	195	3.93e-17		
2id3A	225	4.17e-17	a.4.1.9,a.121.1.1	137261,137262
1ui5A	215	5.33e-17	a.4.1.9,a.121.1.1	107856,107857
2hytA	197	5.53e-17		
2gfnA	209	5.57e-17	a.4.1.9,a.121.1.1	135101,135102
2iekA	200	5.67e-17		
2id6A	202	6.67e-17		
2qcoA	210	6.69e-17		
2raeA	207	8.54e-17		
2jj7A	186	9.43e-17		
2zb9A	214	1.16e-16		
2o7tA	199	1.29e-16		
3cwrA	208	1.45e-16		
2i10A	202	1.48e-16	a.4.1.9,a.121.1.1	136960,136961
2g3bA	208	1.53e-16	a.4.1.9,a.121.1.1	134558,134559
3b81A	203	1.65e-16		
1sgmA	191	1.76e-16	a.4.1.9,a.121.1.1	105537,105538
2np5A	203	2.84e-16	a.4.1.9,a.121.1.1	138424,138425
2of7A	260	5.34e-16		
1zk8A	183	5.62e-16	a.4.1.9,a.121.1.1	125177,125178
2qkoA	215	6.42e-16		
2d6yA	202	6.67e-16	a.4.1.9,a.121.1.1	131313,131314
2fx0A	201	7.28e-16	a.4.1.9,a.121.1.1	134269,134270
2zcmA	192	8.26e-16		
2fd5A	180	1.23e-15	a.4.1.9,a.121.1.1	133291,133292
3colA	196	1.26e-15		
2optA	234	1.29e-15		
2hkuA	215	1.75e-15		
2q24A	194	1.81e-15		
2tct	207	2.04e-15		
3bniA	229	2.41e-15		
2qibA	231	2.62e-15		
2fbqA	235	2.81e-15	a.4.1.9,a.121.1.1	133256,133257
2rekA	199	2.88e-15		
3bqyA	209	3.32e-15		
2qwtA	196	4.53e-15		
2oerA	214	4.69e-15		
3bjbA	207	6.11e-15		
1a6i	217	7.03e-15		
2o7oA	207	8.19e-15	a.4.1.9,a.121.1.1	138930,138931
2iu5A	195	8.62e-15		
2guhA	214	1.48e-14		
2vkeA	208	1.52e-14		
2vprA	207	1.63e-14		
1z0xA	220	1.74e-14	a.4.1.9,a.121.1.1	124334,124335
2eh3A	179	3.57e-14		
2dg8A	193	4.83e-14		
2oi8A	216	5.04e-14		
2yveA	185	6.43e-14		
1v7bA	185	8.63e-14	a.4.1.9,a.121.1.1	119861,119862
2g7gA	213	1.19e-13	a.4.1.9,a.121.1.1	134732,134733
2hxoA	237	2.55e-13		
1t33A	224	7.55e-13	a.4.1.9,a.121.1.1	106295,106296
2g7lA	243	8.36e-13	a.4.1.9,a.121.1.1	134734,134735
2gsqA	202	2.034	a.45.1.1,c.47.1.5	17715,33009
2jn6A	97	3.246		
1zy9A	564	4.834	b.30.5.11,c.1.8.13	125813,125814
1wsuA	124	8.482	a.4.5.35,a.4.5.35	121245,121246
1hlvA	131	8.678	a.4.1.7,a.4.1.7	65854,65855
2pzzA	147	9.529		
2rn7A	108	12.06		
1tu7A	208	14.10	a.45.1.1,c.47.1.5	112653,112654
1on2A	142	16.09	a.4.5.24,a.76.1.1	87103,87104
2pg4A	95	16.94		
2qq9A	226	16.99		
1zcaA	359	17.07	a.66.1.1,c.37.1.8	124897,124898
1n3yA	198	17.52	c.62.1.1	79976
1lbkA	208	17.62	a.45.1.1,c.47.1.5	73809,73810
1tw9A	206	19.13	a.45.1.1,c.47.1.5	107381,107382
2o09A	189	21.51		
2dt5A	211	21.66	a.4.5.38,c.2.1.12	131708,131709
1sfxA	109	22.18	a.4.5.50	105505
2imiA	221	23.60		
1k3yA	221	24.87	a.45.1.1,c.47.1.5	77245,77246
2qvwA	756	26.27		
3bbyA	215	26.81		
2a2rA	210	27.40	a.45.1.1,c.47.1.5	126058,126059
1b0nA	111	27.95	a.34.1.1,a.35.1.3	17001,17064
1ag9A	175	29.33	c.23.5.1	31178
1u8bA	133	33.15		
1tadA	324	34.60	a.66.1.1,c.37.1.8	18194,32077
1m0uA	249	34.65	a.45.1.1,c.47.1.5	78359,78360
1y7yA	74	34.76	a.35.1.3	122729
1ny1A	240	35.49	c.6.2.3	86395
2v9vA	135	35.69		
3co4A	312	39.50		
17gsA	210	39.96	a.45.1.1,c.47.1.5	17524,32818
1jlvA	209	40.05	a.45.1.1,c.47.1.5	71729,71730
2ev0A	142	40.74	a.4.5.24,a.76.1.1	132413,132414
2dskA	311	42.63		
1xjdA	345	44.03	d.144.1.7	115388
2bnmA	198	44.21	a.35.1.3,b.82.1.10	128835,128836
1zljA	78	46.09		
1ciyA	590	47.29	b.18.1.3,b.77.2.1,f.1.3.1	23720,27977,43392
1rd5A	262	48.06	c.1.2.4	111772
1no5A	114	48.10	d.218.1.5	92014
1yixA	265	49.47	c.1.9.12	123371
1lmb3	92	49.93		
2ew8A	249	50.66	c.2.1.2	132447
2dh2A	424	50.79		
2imhA	231	51.40		
1ji6A	589	52.30	b.18.1.3,b.77.2.1,f.1.3.1	63066,63067,63068
2dc5A	231	53.23		
1pgtA	210	53.59	a.45.1.1,c.47.1.5	17515,32809
1x8bA	289	54.22		
2h09A	155	54.23		
1xcbA	211	54.46	a.4.5.38,c.2.1.12	109552,109553
2d1zA	436	55.26		
1vpbA	451	55.91	d.283.1.1	113950
1a0dA	440	56.91	c.1.15.3	29533
2za4B	90	57.17		
2d2mC	147	57.35		
3b7hA	78	61.64		
1xsvA	113	63.84	a.4.13.3	116003
1b4pA	217	64.89	a.45.1.1,c.47.1.5	83158,83159
1ykwA	435	65.31	c.1.14.1,d.58.9.1	123565,123566
2ondA	308	66.78		
1xdyA	298	67.87	d.176.1.1	115186
2d93A	134	67.98		
2f4mB	61	68.23	a.189.1.1	132931
2am1A	454	69.54		
1k1xA	659	71.26	a.8.3.2,b.30.5.8,c.6.2.2	84279,84280,84281
1shuX	182	71.64	c.62.1.1	98882
1kz7A	353	75.20	a.87.1.1,b.55.1.1	73333,73334
1w7jA	795	76.93	b.34.3.1,c.37.1.9	120688,120689
1v2aA	210	76.95	a.45.1.1,c.47.1.5	100263,100264
2on5A	206	77.30		
2hnlA	225	79.26		
3cbuA	214	79.95		
1oc7A	364	80.00	c.6.1.1	86794
1ijbA	202	80.07	c.62.1.1	71229
3bjqA	316	82.04		
1qqeA	292	82.61	a.118.8.1	19210
1zdyA	307	82.65	d.313.1.1	124961
1eyeA	280	82.79	c.1.21.1	29672
2g4rA	160	83.13		
1je8A	82	83.39	a.4.6.2	77108
2fnoA	248	84.21	a.45.1.1,c.47.1.5	133821,133822
1odzA	386	84.45	c.1.8.3	86889
2amxA	376	84.46	c.1.9.1	127024
2vosA	487	85.30		
1iyhA	198	86.64	a.45.1.1,c.47.1.5	83790,83791
2d8dA	90	87.30	a.130.1.1	131329
1uyrA	737	87.46	c.14.1.4,c.14.1.4	100188,100189
1y5eA	169	88.55	c.57.1.1	122632
1fseA	74	89.14	a.4.6.2	60000
1vf1A	229	89.47