# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 4.53e-20 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 8.82e-20 1qvtA 194 1.56e-19 a.4.1.9,a.121.1.1 104602,104603 1jt6A 188 1.69e-19 a.4.1.9,a.121.1.1 67247,67248 2ibdA 204 2.16e-19 3ccyA 203 2.34e-19 2hyjA 200 2.56e-19 1pb6A 212 2.67e-19 a.4.1.9,a.121.1.1 88017,88018 2uxuA 210 4.71e-19 2qtqA 213 5.34e-19 1rktA 205 6.22e-19 a.4.1.9,a.121.1.1 97623,97624 3bruA 222 6.76e-19 1t56A 216 7.84e-19 a.4.1.9,a.121.1.1 106428,106429 2f07A 197 8.34e-19 2g7sA 194 9.84e-19 a.4.1.9,a.121.1.1 134737,134738 2fq4A 192 1.12e-18 a.4.1.9,a.121.1.1 133937,133938 2genA 197 1.20e-18 a.4.1.9,a.121.1.1 135062,135063 2iekA 200 1.29e-18 1z77A 200 1.48e-18 a.4.1.9,a.121.1.1 124588,124589 1ui5A 215 1.53e-18 a.4.1.9,a.121.1.1 107856,107857 2rasA 212 1.54e-18 3bhqA 211 2.24e-18 2id6A 202 2.34e-18 3crjA 199 2.62e-18 3c2bA 221 2.66e-18 1zkgA 212 2.72e-18 a.4.1.9,a.121.1.1 125194,125195 3cdlA 203 3.85e-18 2zcmA 192 4.11e-18 2hytA 197 4.68e-18 3bcgA 215 5.05e-18 2iaiA 230 5.69e-18 3cwrA 208 6.29e-18 2raeA 207 7.33e-18 2qcoA 210 9.88e-18 2nx4A 194 1.00e-17 2dg7A 195 1.02e-17 2zb9A 214 1.05e-17 2o7tA 199 1.54e-17 2jj7A 186 1.86e-17 3cjdA 198 2.00e-17 2i10A 202 2.11e-17 a.4.1.9,a.121.1.1 136960,136961 2qkoA 215 2.31e-17 1sgmA 191 2.54e-17 a.4.1.9,a.121.1.1 105537,105538 2id3A 225 2.85e-17 a.4.1.9,a.121.1.1 137261,137262 1zk8A 183 2.99e-17 a.4.1.9,a.121.1.1 125177,125178 2gfnA 209 3.01e-17 a.4.1.9,a.121.1.1 135101,135102 2tct 207 3.12e-17 2d6yA 202 3.96e-17 a.4.1.9,a.121.1.1 131313,131314 2qibA 231 5.10e-17 3b81A 203 6.01e-17 2optA 234 9.44e-17 3colA 196 1.02e-16 2np5A 203 1.03e-16 a.4.1.9,a.121.1.1 138424,138425 3bqyA 209 1.09e-16 2fx0A 201 1.25e-16 a.4.1.9,a.121.1.1 134269,134270 2fbqA 235 1.27e-16 a.4.1.9,a.121.1.1 133256,133257 2g3bA 208 1.46e-16 a.4.1.9,a.121.1.1 134558,134559 2q24A 194 1.88e-16 2rekA 199 2.46e-16 2fd5A 180 2.75e-16 a.4.1.9,a.121.1.1 133291,133292 2hkuA 215 2.94e-16 3bjbA 207 3.33e-16 2o7oA 207 4.02e-16 a.4.1.9,a.121.1.1 138930,138931 2of7A 260 4.65e-16 3bniA 229 4.86e-16 1a6i 217 5.80e-16 2vkeA 208 6.92e-16 2g7gA 213 8.01e-16 a.4.1.9,a.121.1.1 134732,134733 1z0xA 220 8.12e-16 a.4.1.9,a.121.1.1 124334,124335 2iu5A 195 8.72e-16 2eh3A 179 9.89e-16 2vprA 207 1.03e-15 2oerA 214 1.36e-15 2dg8A 193 1.49e-15 2oi8A 216 1.61e-15 2hxoA 237 2.68e-15 2qwtA 196 2.92e-15 1v7bA 185 3.76e-15 a.4.1.9,a.121.1.1 119861,119862 2guhA 214 4.11e-15 2yveA 185 4.82e-15 1t33A 224 3.63e-14 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 3.78e-13 a.4.1.9,a.121.1.1 134734,134735 1hlvA 131 0.3679 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 0.4798 2dt5A 211 1.086 a.4.5.38,c.2.1.12 131708,131709 2v9vA 135 1.410 1wsuA 124 1.518 a.4.5.35,a.4.5.35 121245,121246 2ev0A 142 1.734 a.4.5.24,a.76.1.1 132413,132414 2qq9A 226 1.855 2rn7A 108 3.128 1on2A 142 3.321 a.4.5.24,a.76.1.1 87103,87104 2pg4A 95 3.724 1sfxA 109 3.951 a.4.5.50 105505 1xsvA 113 5.044 a.4.13.3 116003 3ddeA 239 5.159 1bl0A 129 5.222 a.4.1.8,a.4.1.8 16053,16054 1xcbA 211 6.456 a.4.5.38,c.2.1.12 109552,109553 2h09A 155 9.637 2ahrA 259 11.49 a.100.1.10,c.2.1.6 126775,126776 1y7yA 74 12.06 a.35.1.3 122729 1l3lA 234 13.94 a.4.6.2,d.110.5.1 73541,73542 1fseA 74 15.55 a.4.6.2 60000 1je8A 82 17.55 a.4.6.2 77108 3b7hA 78 18.43 1zljA 78 19.15 2dtrA 226 19.21 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1v2aA 210 19.31 a.45.1.1,c.47.1.5 100263,100264 2o3fA 111 19.48 2b5aA 77 21.18 a.35.1.3 127882 2f4mB 61 22.77 a.189.1.1 132931 2ftsA 419 23.21 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1kz7A 353 24.12 a.87.1.1,b.55.1.1 73333,73334 1utxA 66 24.85 a.35.1.3 108034 2ictA 94 25.18 2o09A 189 26.20 1wa5B 530 26.53 a.118.1.1 114432 1nhyA 219 27.01 a.45.1.1,c.47.1.5 80520,80521 2d4zA 250 28.82 d.37.1.1,d.37.1.1 131260,131261 2gsqA 202 29.25 a.45.1.1,c.47.1.5 17715,33009 1tw9A 206 29.46 a.45.1.1,c.47.1.5 107381,107382 1u8bA 133 31.38 2qvwA 756 32.41 3bddA 142 32.82 2dh2A 424 34.23 1b0nA 111 34.31 a.34.1.1,a.35.1.3 17001,17064 1xo0A 324 34.86 a.60.9.1,d.163.1.1 115674,115675 1zy9A 564 35.11 b.30.5.11,c.1.8.13 125813,125814 1resA 43 37.11 a.4.1.2 16023 1g7oA 215 37.56 a.45.1.1,c.47.1.5 60332,60333 1lrvA 244 37.58 a.118.1.5 19146 1jftA 340 39.27 a.35.1.5,c.93.1.1 66652,66653 2iyvA 184 39.32 c.37.1.2 137812 2ebyA 113 40.48 1dlyA 164 41.53 a.1.1.1 14983 1y9qA 192 42.64 a.35.1.8,b.82.1.15 116592,116593 1lmb3 92 42.75 1zcaA 359 43.48 a.66.1.1,c.37.1.8 124897,124898 1mkmA 249 45.09 a.4.5.33,d.110.2.2 79242,79243 1lvaA 258 45.74 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1r8eA 278 46.26 a.6.1.3,d.60.1.1 104843,104844 1yqgA 263 46.41 2de3A 365 46.78 2d1zA 436 47.08 2r1jL 68 47.39 1px5A 349 48.88 a.160.1.2,d.218.1.6 95277,95278 1r69A 69 48.98 a.35.1.2 17028 1s69A 124 50.31 a.1.1.1 105305 3cuoA 99 50.43 2cro 71 50.66 1lrv 244 50.97 3co4A 312 51.87 1a0cA 438 53.17 c.1.15.3 29529 1ny1A 240 54.10 c.6.2.3 86395 1fx7A 230 54.13 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1adrA 76 54.54 a.35.1.2 17042 1r69 69 55.71 1yuzA 202 56.56 a.25.1.1,g.41.5.1 124077,124078 1z9hA 290 57.48 a.45.1.1,c.47.1.5 124758,124759 1f1eA 154 58.31 a.22.1.2 64927 1k0dA 260 58.67 a.45.1.1,c.47.1.5 67930,67931 1rzsA 61 59.92 a.35.1.2 105139 2on5A 206 59.96 2o8xA 70 60.79 2d1hA 109 61.28 a.4.5.50 131125 2v1xA 591 61.70 2nszA 129 62.38 a.118.1.14 138560 2izzA 322 62.59 1u55A 188 62.77 d.278.1.1 107677 2qwwA 154 63.71 1jyeA 349 63.91 c.93.1.1 67455 2zg5A 397 65.57 2pl2A 217 68.47 1aisB 200 68.92 a.74.1.2,a.74.1.2 18384,18385 2rfpA 171 69.36 3cecA 104 69.79 2c71A 216 71.29 c.6.2.3 130017 1jlvA 209 71.39 a.45.1.1,c.47.1.5 71729,71730 2auwA 170 71.46 a.35.1.10,d.331.1.1 127339,127340 2imsA 171 72.34 2graA 277 72.74 2yxoA 267 72.97 3d1uA 288 73.18 1z91A 147 73.65 a.4.5.28 124736 1a0p 290 74.02 3cmgA 667 74.74 1aj2 282 75.33 2pzzA 147 75.82 3bs3A 76 78.44 2c1iA 431 80.00 c.6.2.3,d.341.1.1 129636,129637 2cx5A 158 80.13 2croA 71 80.22 a.35.1.2 17038 2plcA 274 82.72 c.1.18.2 29614 1j5yA 187 82.74 a.4.5.1,d.94.2.1 71592,71593 3cbuA 214 83.30 1bqcA 302 83.69 c.1.8.3 28831 2vliA 183 84.08 2c3nA 247 84.14 1vh0A 161 85.29 c.116.1.3 100626 1sb8A 352 85.86 c.2.1.2 105410 1wdvA 152 85.97 d.116.1.1 114539 1k2xA 177 87.14 d.153.1.5 90929 2vg3A 284 87.38 1a0dA 440 87.55 c.1.15.3 29533 1s3jA 155 87.86 a.4.5.28 98437 2bnmA 198 88.18 a.35.1.3,b.82.1.10 128835,128836 2rcyA 262 88.38 1ns5A 155 88.59 c.116.1.3 80705 1wd6A 123 89.59 d.58.4.12 114525