# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 2.81e-22 1vi0A 206 3.55e-22 a.4.1.9,a.121.1.1 100720,100721 1pb6A 212 1.27e-21 a.4.1.9,a.121.1.1 88017,88018 2ibdA 204 1.65e-21 1qvtA 194 1.70e-21 a.4.1.9,a.121.1.1 104602,104603 3ccyA 203 1.76e-21 1jt6A 188 2.08e-21 a.4.1.9,a.121.1.1 67247,67248 2uxuA 210 3.37e-21 2hyjA 200 3.67e-21 1t56A 216 4.94e-21 a.4.1.9,a.121.1.1 106428,106429 2g7sA 194 5.44e-21 a.4.1.9,a.121.1.1 134737,134738 1rktA 205 6.70e-21 a.4.1.9,a.121.1.1 97623,97624 3bruA 222 9.61e-21 2f07A 197 1.04e-20 2genA 197 1.22e-20 a.4.1.9,a.121.1.1 135062,135063 3cdlA 203 2.06e-20 2iekA 200 2.10e-20 2fq4A 192 2.30e-20 a.4.1.9,a.121.1.1 133937,133938 1ui5A 215 2.38e-20 a.4.1.9,a.121.1.1 107856,107857 1z77A 200 2.53e-20 a.4.1.9,a.121.1.1 124588,124589 2qtqA 213 2.58e-20 2rasA 212 2.64e-20 3bcgA 215 2.73e-20 3crjA 199 3.71e-20 2id6A 202 4.03e-20 3bhqA 211 4.15e-20 1zkgA 212 4.24e-20 a.4.1.9,a.121.1.1 125194,125195 3c2bA 221 4.76e-20 2hytA 197 7.97e-20 2qcoA 210 7.98e-20 2zcmA 192 8.08e-20 2iaiA 230 8.33e-20 2id3A 225 8.50e-20 a.4.1.9,a.121.1.1 137261,137262 2raeA 207 1.13e-19 3cwrA 208 1.46e-19 2dg7A 195 1.49e-19 2nx4A 194 1.73e-19 2jj7A 186 1.94e-19 2zb9A 214 2.83e-19 2o7tA 199 2.91e-19 1sgmA 191 3.14e-19 a.4.1.9,a.121.1.1 105537,105538 3cjdA 198 4.63e-19 1zk8A 183 5.91e-19 a.4.1.9,a.121.1.1 125177,125178 2i10A 202 5.94e-19 a.4.1.9,a.121.1.1 136960,136961 2gfnA 209 6.25e-19 a.4.1.9,a.121.1.1 135101,135102 2qkoA 215 6.91e-19 2tct 207 7.93e-19 2fbqA 235 9.48e-19 a.4.1.9,a.121.1.1 133256,133257 3bqyA 209 1.15e-18 2d6yA 202 1.16e-18 a.4.1.9,a.121.1.1 131313,131314 2qibA 231 1.53e-18 3b81A 203 1.61e-18 2optA 234 3.21e-18 2np5A 203 3.58e-18 a.4.1.9,a.121.1.1 138424,138425 2g3bA 208 3.96e-18 a.4.1.9,a.121.1.1 134558,134559 3colA 196 4.31e-18 2hkuA 215 5.82e-18 2fx0A 201 6.71e-18 a.4.1.9,a.121.1.1 134269,134270 3bjbA 207 7.04e-18 2q24A 194 7.04e-18 2fd5A 180 8.90e-18 a.4.1.9,a.121.1.1 133291,133292 2rekA 199 9.48e-18 3bniA 229 1.46e-17 1a6i 217 1.70e-17 2of7A 260 2.00e-17 2g7gA 213 2.57e-17 a.4.1.9,a.121.1.1 134732,134733 2vkeA 208 2.71e-17 2vprA 207 3.30e-17 1z0xA 220 3.40e-17 a.4.1.9,a.121.1.1 124334,124335 2iu5A 195 4.03e-17 2o7oA 207 4.32e-17 a.4.1.9,a.121.1.1 138930,138931 2oerA 214 4.52e-17 2dg8A 193 4.93e-17 2eh3A 179 5.43e-17 2hxoA 237 7.06e-17 2oi8A 216 7.22e-17 2qwtA 196 1.30e-16 1v7bA 185 2.03e-16 a.4.1.9,a.121.1.1 119861,119862 2yveA 185 2.28e-16 2guhA 214 2.74e-16 1t33A 224 1.90e-15 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 3.24e-14 a.4.1.9,a.121.1.1 134734,134735 1hlvA 131 0.8310 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 1.228 2qq9A 226 1.305 2v9vA 135 1.695 1zy9A 564 2.128 b.30.5.11,c.1.8.13 125813,125814 2dt5A 211 2.226 a.4.5.38,c.2.1.12 131708,131709 2ev0A 142 2.279 a.4.5.24,a.76.1.1 132413,132414 1wsuA 124 2.728 a.4.5.35,a.4.5.35 121245,121246 3ddeA 239 4.729 1on2A 142 5.343 a.4.5.24,a.76.1.1 87103,87104 1qv1A 195 6.159 a.39.1.5 96347 2pg4A 95 6.891 2gfhA 260 9.143 c.108.1.6 135096 2d4zA 250 9.593 d.37.1.1,d.37.1.1 131260,131261 1n3yA 198 9.593 c.62.1.1 79976 1sfxA 109 10.01 a.4.5.50 105505 1xsvA 113 10.25 a.4.13.3 116003 1bl0A 129 10.82 a.4.1.8,a.4.1.8 16053,16054 2pzzA 147 11.57 1vjjA 692 13.49 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1sb8A 352 15.92 c.2.1.2 105410 1d0cA 444 16.73 d.174.1.1 64769 2h09A 155 16.73 2o09A 189 17.33 3cs1A 219 17.60 1u2xA 474 19.02 c.72.1.3 107622 2ahrA 259 19.24 a.100.1.10,c.2.1.6 126775,126776 1v7pC 200 21.54 c.62.1.1 108408 1bw0A 416 21.55 c.67.1.1 34385 1ny1A 240 21.67 c.6.2.3 86395 1vhuA 211 22.48 c.50.1.2 100703 2yzqA 282 23.82 2qguA 211 24.33 1wa5B 530 25.14 a.118.1.1 114432 2rn7A 108 25.68 2yr1A 257 26.32 1y7yA 74 26.89 a.35.1.3 122729 2dtvA 397 28.12 1l3lA 234 29.46 a.4.6.2,d.110.5.1 73541,73542 2f4mB 61 29.51 a.189.1.1 132931 1mf7A 194 31.04 c.62.1.1 84937 1dlyA 164 31.29 a.1.1.1 14983 2dtrA 226 32.35 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1kz7A 353 32.98 a.87.1.1,b.55.1.1 73333,73334 1q06A 135 33.75 a.6.1.3 95493 1vflA 356 34.42 c.1.9.1 120041 1uuqA 440 34.58 c.1.8.3 100015 2bnxA 386 34.72 a.118.1.23 128861 1v2aA 210 34.97 a.45.1.1,c.47.1.5 100263,100264 2qt3A 403 35.10 1a0dA 440 35.20 c.1.15.3 29533 1o26A 232 35.45 d.207.1.1 86566 1p2xA 159 35.94 a.40.1.1 104062 2imsA 171 36.90 2gsqA 202 39.37 a.45.1.1,c.47.1.5 17715,33009 2ia2A 265 39.50 1fseA 74 39.76 a.4.6.2 60000 1ah7A 245 39.79 a.124.1.1 19339 2dskA 311 40.68 2ghaA 382 41.02 1js1X 324 41.26 c.78.1.1,c.78.1.1 71834,71835 3b7hA 78 42.91 2zg5A 397 43.84 2vosA 487 45.81 2nszA 129 45.85 a.118.1.14 138560 1vh0A 161 45.96 c.116.1.3 100626 2o3fA 111 45.99 1phkA 298 46.00 d.144.1.7 41635 1s69A 124 46.07 a.1.1.1 105305 1zljA 78 46.29 3b8dA 363 47.23 2ftsA 419 47.89 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 2btdA 210 49.92 2rfpA 171 50.94 1z45A 699 51.87 b.30.5.4,c.2.1.2 124427,124428 1xo0A 324 52.28 a.60.9.1,d.163.1.1 115674,115675 2i9uA 439 52.53 3bddA 142 52.55 2b5aA 77 53.43 a.35.1.3 127882 2vg3A 284 54.01 1k77A 260 54.64 c.1.15.5 72096 1je8A 82 55.85 a.4.6.2 77108 1qs0A 407 55.96 c.36.1.11 31829 1b0nA 111 56.21 a.34.1.1,a.35.1.3 17001,17064 1f1eA 154 56.52 a.22.1.2 64927 2dri 271 56.57 1ooyA 481 56.99 c.124.1.3,c.124.1.2 93388,93389 1k0dA 260 57.89 a.45.1.1,c.47.1.5 67930,67931 1vljA 407 59.54 e.22.1.2 108832 1bgpA 309 59.54 a.93.1.1 18690 1utxA 66 60.26 a.35.1.3 108034 2zc0A 407 60.67 1p0kA 349 60.94 c.1.4.1 87648 1xqrA 296 61.31 a.118.1.21 122241 2ictA 94 61.49 1x9fB 145 62.91 a.1.1.2 114984 1i4nA 251 63.26 c.1.2.4 71114 1ho8A 480 65.64 a.118.1.9 61107 2on5A 206 66.39 2fncA 381 66.54 3boqA 160 67.33 2vliA 183 68.52 1r1dA 247 68.59 c.69.1.29 96813 1ah7 245 70.29 2p4qA 497 70.39 1ek6A 348 71.74 c.2.1.2 29800 1eyeA 280 72.21 c.1.21.1 29672 2iyvA 184 73.15 c.37.1.2 137812 1muwA 386 73.46 c.1.15.3 79495 1qusA 322 73.51 d.2.1.6 36991 2plcA 274 73.99 c.1.18.2 29614 1ia8A 289 74.19 d.144.1.7 62112 1pq1A 196 75.94 f.1.4.1 94986 1lmb3 92 76.16 1yuzA 202 76.66 a.25.1.1,g.41.5.1 124077,124078 1riiA 265 77.20 c.60.1.1 111807 1lucA 355 77.48 c.1.16.1 29547 1ijbA 202 78.20 c.62.1.1 71229 2z0xA 158 78.30 1yqgA 263 78.51 2pl2A 217 78.53 1oywA 523 82.47 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1xcbA 211 83.22 a.4.5.38,c.2.1.12 109552,109553 2btzA 394 83.94 1u8bA 133 84.45 2scpA 174 86.34 a.39.1.5 17256 2eplX 627 86.38 3cc1A 433 86.46 1shuX 182 86.66 c.62.1.1 98882 1fx7A 230 86.83 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2pvqA 201 86.91 3cuoA 99 87.61